Gene detail

Gene detail information of Glyur000747s00029096

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49890.1	0	chloride channel C
NR	XP_004512643.1	0	PREDICTED: chloride channel protein CLC-c-like isoform X1 [Cicer arietinum]
COG	YP_007130715.1	4.00E-27	Cl- channel voltage-gated family protein [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q96282\|CLCC_ARATH	0	Chloride channel protein CLC-c
trEMBL	tr\|G7KPA0\|G7KPA0_MEDTR	0	Chloride channel protein {ECO:0000256\|RuleBase:RU361221}

Sequence

Transcript Sequence

>Glyur000747s00029096.1
GTTCCTGTGACATCGGCTGGTGAAGTTGATAAGAAGATGGATAGAGAAGATAATGTGAACAATGGTGAAGATGTGCGTGATATAGAACATGATGGTCGAGTGGATGGGAACGAGGAAATCGGAAGGTATTGGTCAGAATATTCTGAGAGAAACAGGACATATACAGAGCCACTTCTTGTGAAGAGGATTAACACTACCTCCCAGATTGCCATCGTTGGTTCCAACCTCTGTCCTATCGAAAGCCTGGACTATGAGGTTTTTGATAATGAAATATTTAACCAGGACTGGAGATCCAGGAAGAAGGTTCAGATATTCCAGTATGTGGTACTTAAATGGGCATTTGCTCTTCTTATTGGATTAGGAACTGGACTGGTTGGCTTCTTTAATAATATTTCAGTTGAGAACATAGCTGGTTTCAAGCTGGTTTTGACAACCAGTCTCATGTCTAAACACAGATATTTTGAGGCTTTTCTAGCNTATGCTGGTCTCAATATAGTTTTAGCAGCAGCGGCTGCAGCACTCTGTGCTTTCATTGCTCCAGCTGCGGCAGGCTCTGGCATTCCGGAGGTTAAAGCATATCTCAACGGCATCGATGCTCACACTATACTGGCTCCAAAAACCCTTTTTGTAAAGATTGTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAAGGACCTATGGTTCATACAGGTGCATGCATAGCTTCTTTGTTAGGGCAGGGTGGATCTCGCAAGTATGGTTTGACTTGGACTTGGCTTAGGTATTTCAAAAATGACCGAGACCGGCGAGACATGATTACCTGTGGTGCAGCTGCTGGTGTTGCNGCTGCCTTTCGTGCTCCAGTTGGTGGTGTCCTCTTTGCCCTTGAGGAGGCAGCTTCATGGTGGCGGAGTGCTCTTCTGTGGAGGACATTTTTCACTACAGCACTTTGTTCCACAGGGAAGTGTGGGCTATTTGGGGAAGGTGGTCTCATAATGTATGATGTCAGTTCAGCCATGGTAACATATAGTGTTGGTGATATAGTGGCAGTAATAGTCGTGGGAACTCTTGCTGGTTTTCTTGGAAGCATGTATAACTACCTCGTGGATAAGGTTATTCGTACCTATAGCATCATCAACGAAAAAGGTCCAGCTTTCAAAATCTCTCTTGCTGTCACAGTTGCTCTTTTGACATCATGTTGTTATTACTTCCTACCATTTGTTGCAACATGTATCCCTTGTCCTGCCGATGCGGCGGTGACCTGTCCCTCTGTTGATGAGTCAGGAGAATACAAAATCTTTCAGTGTCCACCAGGCCACTACAATGATCTGGCTTCCCTCTTTCTAAACACCAATGACGACGCTATTCGTAATCTATTCAGTCCCAAGATAGCCAAAGAGTTTCATATTTCAAGTCTGTTTATCTTCTTTGCTACTGTTTACTGTCTTGGGATAATCACTTATGGTATTGCTATTCCATCCGGGCTGTTCATTCCTGTGATACTTGCCGGGGCTGCCTATGGCCGTCTTCTCGGGAGGCTCTTCGAACCGATCGCCAACCTTGATAGGGGACTCTTCTCTCTCCTTGGAGCTGCCTCCTTCCTTGGNGGCACCATGAGAATGACAGTCTCCATTTGTGTTATATTGCTTGAGCTCACTAATGATCTCTTGTTACTCCCACTTGTGATGTTGGCCTTATTAATCTCGAAAACCGTGGCCGATTGCTTTAACAAGGGCGTCTACGATCAAATACTGCATATCAAAGGACTTCCTTATTTGGAAGCCTATGCAGAACCTTACATGAGGAATATAGTTACGCGTGATGTTGTCTCGGGTCCATTAATGACCTTTTCTGGGATCGAAAGGGTGGGGAATATATTGCATGTTTTGACTGCTACAAATCACAATGGGTTTCCTGTCATTGATGAACCCCCTTTCTCAGATGCACCGGAGTTGTGCGGGCTTGTACTGAGGTCTCATTTACTGGTTTTACTGAATGCGAAGAACTTTACGAGAGACANGGTTTTTGCGGATCAGAGTATCTTGGAAAGAGTGCGTGTGTTGGATTTTGGAAAGGCAGGATCAGGNAAGGGAATCAAGCTAGAGGATCTAGATATCCAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATAACTAATGCATCCCCATGCACTGTGAGGCCTCCAATTGTCGGGATTCTAACACGCCACGATTTTATGCCTGAGCATGTTTTGGGACTTTACCCCAATATCAAGCCACACAAATGGCACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00747	108438	115291	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006821 chloride transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005247 voltage-gated chloride channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000747s00029096.1	PF00654.15	Voltage_CLC	167	571	4.70E-83
Glyur000747s00029096.1	PF00571.23	CBS	604	661	0.00018

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.685
SRR1783600	control	8.023
SRR1783602	moderate drought stress	9.068
SRR1811619	moderate drought stress	9.050

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.008
DRR006520	Root Summer glycyrrhizin high producing strain	5.298
DRR006521	Root Winter glycyrrhizin high producing strain	6.640
DRR006522	Root Winter glycyrrhizin high producing strain	6.859
DRR006523	Root Summer glycyrrhizin low producing strain	5.929
DRR006524	Root Summer glycyrrhizin low producing strain	5.431
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.774
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.254

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.564
SRR2868004	Drought Stress (root)	17.688
SRR2967015	Control (root)	15.138

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.138
SRR9715740	Leaf	42.079
SRR9715741	Leaf	45.461
SRR9715739	Root	6.897
SRR9715742	Root	17.109
SRR9715743	Root	14.766

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.890
SRR8749028	MeJA induced 9h	10.314
SRR8749029	MeJA induced 9h	2.811
SRR8749030	Uninduced	3.991
SRR8749031	Uninduced	1.513
SRR8749032	Uninduced	1.584

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.079
SRR8400027	Control - Root	16.413