Gene detail

Gene detail information of Glyur000747s00029095

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49890.1	3.00E-120	chloride channel C
NR	XP_004512643.1	0	PREDICTED: chloride channel protein CLC-c-like isoform X1 [Cicer arietinum]
COG	NP_927128.1	1.00E-14	chloride channel protein [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q96282\|CLCC_ARATH	1.00E-160	Chloride channel protein CLC-c
trEMBL	tr\|G7KPA0\|G7KPA0_MEDTR	0	Chloride channel protein {ECO:0000256\|RuleBase:RU361221}

Sequence

Transcript Sequence

>Glyur000747s00029095.1
ATGGGTTCCGCTTCTCTTATGCATTCTCCTCCTCTTCCCACTCAACCCGGAGAATACAAAATCTTTCAGTGTCCACCAGGCCACTACAATGATCTGGCTTCCCTCTTTCTAAACACCAATGACGACGCTATTCGTAATCTATTCAGTCCCAAGATAGCCAAAGAGTTTCATATTTCAAGTCTGTTTATCTTCTTTGCTACTGTTTACTGTCTTGGGATAATCACTTATGGTATTGCTATTCCATCCGGGCTGTTCATTCCTGTGATACTTGCCGGGGCTGCCTATGGCCGTCTTCTCGGGAGGCTCTTCGAACCGATCGCCAACCTTGATAGGGGACTCTTCTCTCTCCTTGGAGCTGCCTCCTTCCTTGGTGGCACCATGAGAATGACAGTCTCCATTTGTGTTATATTGCTTGAGCTCACTAATGATCTCTTGTTACTCCCACTTGTGATGTTGGCCTTATTAATCTCGAAAACCGTGGCCGATTGCTTTAACAAGGGCGTCTACGATCAAATACTGCATATCAAAGGACTTCCTTATTTGGAAGCCTATGCAGAACCTTACATGAGGAATATAGTTACGCGTGATGTTGTCTCGGGTCCATTAATGACCTTTTCTGGGATCGAAAGGGTGGGGAATATATTGCATGTTTTGACTGCTACAAATCACAATGGGTTTCCTGTCATTGATGAACCCCCTTTCTCAGATGCACCGGAGTTGTGCGGGCTTGTACTGAGGTCTCATTTACTGGTTTTACTGAATGCGAAGAACTTTACGAGAGACAAGGTTTTTGCGGATCAGAGTATCTTGGAAAGAGTGCGTGTGTTGGATTTTGGAAAGGCAGGATCAGGTAAGGGAATCAAGCTAGAGGATCTAGATATCCAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATAACTAATGCATCCCCATGCACTGTGAGGCCTCCAATTGTCGGGATTCTAACACGCCACGATTTTATGCCTGAGCATGTTTTGGGACTTTACCCCAATATCAAGCCACACAAATGGCACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00747	92513	94728	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006821 chloride transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005247 voltage-gated chloride channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000747s00029095.1	PF00654.15	Voltage_CLC	36	162	2.00E-27
Glyur000747s00029095.1	PF00571.23	CBS	195	252	6.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.236
SRR1783600	control	8.921
SRR1783602	moderate drought stress	8.571
SRR1811619	moderate drought stress	8.598

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.372
DRR006520	Root Summer glycyrrhizin high producing strain	4.927
DRR006521	Root Winter glycyrrhizin high producing strain	5.827
DRR006522	Root Winter glycyrrhizin high producing strain	5.208
DRR006523	Root Summer glycyrrhizin low producing strain	4.353
DRR006524	Root Summer glycyrrhizin low producing strain	4.292
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.965
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.187

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.764
SRR2868004	Drought Stress (root)	10.615
SRR2967015	Control (root)	10.269

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.895
SRR9715740	Leaf	49.086
SRR9715741	Leaf	31.314
SRR9715739	Root	5.365
SRR9715742	Root	7.091
SRR9715743	Root	6.866

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.080
SRR8749028	MeJA induced 9h	7.568
SRR8749029	MeJA induced 9h	3.097
SRR8749030	Uninduced	4.295
SRR8749031	Uninduced	2.657
SRR8749032	Uninduced	1.841

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.897
SRR8400027	Control - Root	11.022