Gene detail

Gene detail information of Glyur000747s00029094

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49160.1	0	methyltransferase 1
NR	KHN19261.1	0	DNA (cytosine-5)-methyltransferase 1 [Glycine soja]
COG	YP_166300.1	6.00E-43	DNA methylase, C-5 cytosine-specific family [Ruegeria pomeroyi DSS-3]
Swissprot	tr\|P34881\|DNMT1_ARATH	0	DNA (cytosine-5)-methyltransferase 1
trEMBL	tr\|I1KCC0\|I1KCC0_SOYBN	0	Cytosine-specific methyltransferase {ECO:0000256\|RuleBase:RU000417}

Sequence

Transcript Sequence

>Glyur000747s00029094.1
ATGGCTGGAGATAAACGAAAGAAGCGAGGTTTGCCAGATAAAAGTGAGCAGCCAGCTGCTACTCGCAAAATGCCAAAACGAGCTGCAGCCGCGGCATGTAAAAATCTGAAGGAGAAATCTTTTTCTATTCCTGAGAAATCTTGTCTTATTGAGACAAAGAAGGATCAGATTGTAGACGACGAAGTTCTAGCTGTCCACCTGACTCCTGGACATGATGATGGCAAACCAAATAGAAGAATTACAGACTTTATCCTTCATGATGAAAGCGGTACAGCGCAGCCACTTGAGATGATGGAAATTAATGATTTATTTATCTCTGGAGTTATATTGCCACTANAAGCAAGTACAGACAAGAAAAAAGAGAAAGGGGTTAGATGTGAAGGCTTTGGTCGAATTGAAACATGGGATATATCTGGCTATGAAGATGACACTCCAGTGGTATGGCTTTCTACTGATGTTGCTGATTATCATTGCCTAAAACCAGCTACTAGTTACAAAAAATTTTATGATCACTTCTTTCATAAGGCCCTTGCATGTATAGAAGTATACAAAAAACTTGCGAAGTCTTCTGGTGGGGACCCTGNCATAAGTCTTGATGAGTTACTTGCTGGCATAGCACGTTCTATGAGTGGTAACAAGTACTTTTCTGGTGCTGCATCTATAAAGGATTTCATTGTTTCTCAGGGTGAGTTTATTTATAAGCAGCTCATTGGTTTAGACATGACATCCAAGCCAAATGACAGGATGTTTGTAGATATTCCTGCTCTTCTTGCTCTTAGAGATGAGAGTAAGAAACAAGCAAACTATGTACATACACAAGCAATGCCATCAAATGGGAGTTTAAGGATTGATTCAGGAAATGGAACTGAAGAGGACAAGAGTCAGATGAATTCAACTTCTGTAGCTGAGGAAGACGAGGATGCAAAGTTAGCACGGCTTTTGCAGGAAGAAGAGTATTGGCAATCCATGAAGCAGAAGAAAAACCCCAGATCAGCCTCTGGATCTAACAAATACTATATCAAAATTAATGAAGATGAGATTGCCAATGATTACCCTCTCCCTGCTTATTATAAAACCTCTCTTCAAGAAACAGATGAATTTATAGTTTTCGATAATGACTATGACCTGTATGACATTGAAGATCTTCCTCGAAGCATGCTGCATAATTGGTCTTTATACAACTCTGATGCAAGATTGATTTCCTTGGAACTTCTGCCNATGAAACCTTGCTCAGAGATTGATGTTACCATCTTTGGATCAGGTATAATGACTGCTGATGATGGAAGTGGGTTCCATCTGGAGGATACTGAGGCTGGCCAATCTTCTTCCAATGCTTCTGGAGCACAAGTTACTGATGGAATTCCAATTTATCTGAGTGCCATAAAGGAATGGATGATTGAATTTGGATCGTCTATGATTTTCATATCCATCCGAACAGATATGGCCTGGTATAGACTTGGCAAACCATCAAAGCAGTACGCTCCTTGGTATGACACAGTATTGAAAACTGCAAGGCTTGCTATAAGCATTATCACATTGTTGAAGGAGCAGAGCCGAGTATCACGGCTTTCCTTTGGAGATGTCATCAAAAAAATGTCTGAGTTTACTCAAAAGCANAAGTCATACATTTCTTCTGATCCATTGGCTATTGAGAGATATNTTGTTGTCCATGGACAGATAATTCTGCAATTGTTTGCAGAATTTCCTGACGACAAGATCAGAAAGTCTGCTTTTGTGACTGGTCTTATGAGCAAAATGGAAGAACGGCACCATACTAAATGGTTAGTGAAGAAGAAGAAAGTTTTGCCAAGGGGTGAACCAAATCTAAATCCTCGGGCATCAATGGCTCCTGTTGCATCCAAAAGGAAAGCTATGCAAGCTACCACAACGAAGTTGATCAATAGAATATGGGGAGAGTATTACTCAAACCACATGCCAGAGGATTCAAAAGAGGGAACTGCCAATGAATTAAAGGACGAGGATGAAGTGGAGGAACAGGAAGAGAATGAAGATGAAGATAATGAGGAGGAGACAGTAGTCTTAGAGGGAACCCAAAAGCCACACTCAGCTTCCAAACAAACCAAAGCATTTTCTGCTGACAGTGAAATAAGATGGGAAGGGGTTTCTGAAGGGAAGACCAGTTCTGGATGCCTTCTTTATAAGCAGGCAATTATTCATGGTGAAGTTGTTTCTGTGGGAGGATCCGTGTCGGTGGAAGCTGATGAATCGGANGAACTTCCTGATATATATTATGTTGAATACATGTTTGAATCAAAGGGTGGAAGAAAAATGTTTCACGGTAGGATGATGCAGCATGGTTGCCAGACTGTTCTTGGAAACACTGCTAATGAGAGGGAGGTGTTTTTGACTAATGAGTGCAGGGATTTGGGACTGCAGGATGTTAAGCAGACAGTTGTTGTAGATATTCGAAAAATGCCTTGGGGGCATCANCATCGAAACGATAATATTGTTGCAGATAAAATGGATAGGGCTAGAGCAGAAGAAAGGAAGAAGAAAGGACTACCTACTGAATATTACTGTAAAAGTTTGTACTGGCCTGAAAGAGGTGCTTTCTTCAGCCTTCCATTTGATTCTTTGGGTCTCGGGTCTGGCATTTGTCACTCTTGCAAACTACAGGAAGCCGAAAAGGAGAAGGATATTTTCAAAGTTAATTCATCTAAGTCTAGCTTCCTATTGGAAGGAACTGAATATTGTCTTAATGATTATATTTATGTAAGTCCTTTTGAATTTGAGGAGAGGATAGAGCAGGGGGCTTTTAAGAGTGGGAGGAATGTAGGGTTGAAAGCTTATGTTGTGTGTCAAGTGCTTGAGATCCTTGTGAAAAAGGAAATTAAACAAGCCGATATAAAATCTACACAGGTCAAAGTCAGAAGGTTCTTCCGACCAGAAGATGTATCAAATGAGAAGGCATACTGCTCTGATGTACAAGAGGTGTATTACAGCGATGAAACAGATATAATCTCTGTACAATCCATAGAAGGTAAATGTGAAGTCAGAAAAAAGAATGACATCCCTGAATGCAGTGCCCCTGGAATCTTCCAAAATGTCTTTTTCTGCGAGCACTTGTATGATCCTAACACTGGGTCACTCAAGAAGTTGCCAGCTCATATTAAAGTAAAATATTCAAGTGGACATACAGCTGATGCTACAGCTAGAAAGAGAAAGGGAAAATCTAAAGAGGGAGATAGCATTTCAGAGCCTGATCTGGAGAGAAAGACATCAAGTGAAAAATGTTTAGCAACCTTGGACATTTTTGCAGGTTGTGGTGGTTTATCACAGGGGTTGCAGCAGTCGGGAATTTCATCAACTAAATGGGCTATTGAGTATGAAGAACCAGCTGGGGATGCGTTTAAAGCTAATCATCCCGAAGCATTGGTGTTTATTAACAATTGCAATGTTATTCTTAGGGCTATAATGGAGAAGTGTGGGGACACAGATGATTGTATCTCAACAAGCGAGGCTTCAGAGTTGGCCGCGAAACTTGATGAGAAGGAAATAAGTAGTTTACCCATGCCTGGGCAAGTTGATTTCATTAATGGGGGTCCTCCATGCCAGGGTTTCTCTGGGATGAATAGGTTTAACCAAAGCAGTTGGAGTAAAGTCCAGTGTGAGATGATATTAGCATTCTTATCCTTTGCCGATTATTTCCGGCCGAGGTATTTTCTTTTGGAGAATGTGAGGAACTTTGTGTCTTTTAATAAAGGACAGACATTCCGGCTAACATTGGCTTCACTTCTTGAGATGGGTTATCAGGTGAGGTTTGGTATCCTTGAGGCTGGAGCTTTTGGGGTTTCACAGTCAAGAAAGAGGGCATTTATATGGGCAGCCTCCCCGGAGGATGTGCTTCCTGAGTGGCCAGAACCAATGCATGTCTTCTCTGCCCCTGAGTTGAAAATCACACTGTCAGAAAATGTCCAGTATGCTGCTGTCCGCAGTACTGCAAATGGTGCCCCNTTACGTGCAATAACTGTCCGGGATACGATTGGTGATCTCCCAGTTTATCAAAATGATCCTGCCTCGTGGTTTCAAAAGAAGATTCGAGGTGATATGGTTGTCTTGACTGATCATATATCAAAGGAGATGAATGAATTGAACTTGATTCGATGTCAGAAAATTCCTAAGAGACCAGGCGCTGATTGGCGTGATCTTCCAGATGAAAAGGTAAAACTGTCTACTGGACAAGTTGTTGATTTGATACCNTGGTGCTTGCCAAACACAGCCAAGCGGCATAATCAATGGAAAGGACTCTTTGGTAGGTTGGATTGGCAAGGCAATTTCCCAACTTCCATTACAGANCCTCAACCAATGGGGAAGGTTGGAATGTGCTTCCATCCTGACCAAGATAGGATTCTTACTGTTCGCGAATGCGCCCGATCTCANGTAAGTCTATTACTGAAGTTAGTTTTCACCCTAACTGGCTTCCCAGACAGCTATCAATTTTCTGGTAACATCATACACAAGCACAGGCAGATTGGTAATGCTGTTCCTCCTCCTCTGGCATTTGCATTAGGGAGAAAGCTCAAGGAAGCAGTTGATAGTAAGAGCTCCACTTAG

Protein Sequence

>Glyur000747s00029094.1
MAGDKRKKRGLPDKSEQPAATRKMPKRAAAAACKNLKEKSFSIPEKSCLIETKKDQIVDDEVLAVHLTPGHDDGKPNRRITDFILHDESGTAQPLEMMEINDLFISGVILPLXASTDKKKEKGVRCEGFGRIETWDISGYEDDTPVVWLSTDVADYHCLKPATSYKKFYDHFFHKALACIEVYKKLAKSSGGDPXISLDELLAGIARSMSGNKYFSGAASIKDFIVSQGEFIYKQLIGLDMTSKPNDRMFVDIPALLALRDESKKQANYVHTQAMPSNGSLRIDSGNGTEEDKSQMNSTSVAEEDEDAKLARLLQEEEYWQSMKQKKNPRSASGSNKYYIKINEDEIANDYPLPAYYKTSLQETDEFIVFDNDYDLYDIEDLPRSMLHNWSLYNSDARLISLELLPMKPCSEIDVTIFGSGIMTADDGSGFHLEDTEAGQSSSNASGAQVTDGIPIYLSAIKEWMIEFGSSMIFISIRTDMAWYRLGKPSKQYAPWYDTVLKTARLAISIITLLKEQSRVSRLSFGDVIKKMSEFTQKXKSYISSDPLAIERYXVVHGQIILQLFAEFPDDKIRKSAFVTGLMSKMEERHHTKWLVKKKKVLPRGEPNLNPRASMAPVASKRKAMQATTTKLINRIWGEYYSNHMPEDSKEGTANELKDEDEVEEQEENEDEDNEEETVVLEGTQKPHSASKQTKAFSADSEIRWEGVSEGKTSSGCLLYKQAIIHGEVVSVGGSVSVEADESXELPDIYYVEYMFESKGGRKMFHGRMMQHGCQTVLGNTANEREVFLTNECRDLGLQDVKQTVVVDIRKMPWGHXHRNDNIVADKMDRARAEERKKKGLPTEYYCKSLYWPERGAFFSLPFDSLGLGSGICHSCKLQEAEKEKDIFKVNSSKSSFLLEGTEYCLNDYIYVSPFEFEERIEQGAFKSGRNVGLKAYVVCQVLEILVKKEIKQADIKSTQVKVRRFFRPEDVSNEKAYCSDVQEVYYSDETDIISVQSIEGKCEVRKKNDIPECSAPGIFQNVFFCEHLYDPNTGSLKKLPAHIKVKYSSGHTADATARKRKGKSKEGDSISEPDLERKTSSEKCLATLDIFAGCGGLSQGLQQSGISSTKWAIEYEEPAGDAFKANHPEALVFINNCNVILRAIMEKCGDTDDCISTSEASELAAKLDEKEISSLPMPGQVDFINGGPPCQGFSGMNRFNQSSWSKVQCEMILAFLSFADYFRPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPEDVLPEWPEPMHVFSAPELKITLSENVQYAAVRSTANGAPLRAITVRDTIGDLPVYQNDPASWFQKKIRGDMVVLTDHISKEMNELNLIRCQKIPKRPGADWRDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWQGNFPTSITXPQPMGKVGMCFHPDQDRILTVRECARSXVSLLLKLVFTLTGFPDSYQFSGNIIHKHRQIGNAVPPPLAFALGRKLKEAVDSKSST

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00747	69551	76134	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00558	DNMT1, dcm	EC:2.1.1.37	Cysteine and methionine metabolism	map00270
			MicroRNAs in cancer	map05206

Gene Ontology

biological_process
GO:0006306 DNA methylation

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000747s00029094.1	PF12047.3	DNMT1-RFD	73	207	2.60E-40
Glyur000747s00029094.1	PF12047.3	DNMT1-RFD	380	534	3.20E-46
Glyur000747s00029094.1	PF01426.13	BAH	729	862	8.40E-24
Glyur000747s00029094.1	PF01426.13	BAH	903	1041	7.00E-24
Glyur000747s00029094.1	PF00145.12	DNA_methylase	1088	1130	9.00E-05
Glyur000747s00029094.1	PF00145.12	DNA_methylase	1173	1515	5.40E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.631
SRR1783600	control	2.643
SRR1783602	moderate drought stress	1.783
SRR1811619	moderate drought stress	1.734

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.927
DRR006520	Root Summer glycyrrhizin high producing strain	2.838
DRR006521	Root Winter glycyrrhizin high producing strain	0.789
DRR006522	Root Winter glycyrrhizin high producing strain	0.802
DRR006523	Root Summer glycyrrhizin low producing strain	2.075
DRR006524	Root Summer glycyrrhizin low producing strain	2.064
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.064
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.011

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.617
SRR2868004	Drought Stress (root)	6.975
SRR2967015	Control (root)	7.578

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.976
SRR9715740	Leaf	0.803
SRR9715741	Leaf	0.917
SRR9715739	Root	0.667
SRR9715742	Root	2.458
SRR9715743	Root	1.877

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.886
SRR8749028	MeJA induced 9h	12.991
SRR8749029	MeJA induced 9h	6.566
SRR8749030	Uninduced	1.152
SRR8749031	Uninduced	0.826
SRR8749032	Uninduced	0.526

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.076
SRR8400027	Control - Root	8.283