Gene detail

Gene detail information of Glyur000747s00029093

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23530.1	1.00E-115	carboxyesterase 18
NR	XP_004494115.1	0	PREDICTED: probable carboxylesterase 18-like [Cicer arietinum]
COG	YP_004089215.1	3.00E-25	alpha/beta hydrolase fold-3 domain protein [Asticcacaulis excentricus CB 48]
Swissprot	tr\|Q9LT10\|CXE18_ARATH	3.00E-143	Probable carboxylesterase 18
trEMBL	tr\|G7KNV2\|G7KNV2_MEDTR	0	Carboxylesterase {ECO:0000313\|EMBL:AES75936.1}

Sequence

Transcript Sequence

>Glyur000747s00029093.1
ATGGAAACTTCCAAACCCAAATCCCCCAAACCCATTCTTCCTTGGAAAACCCGCATTTCAATTTCAGTCCTAAGCGCTCTAACGGACGCATCGCGTCGCTCTAACGGCACCGTTAACCGCCGTCTCCTCGGCCTCCTCGACCGCAAGTCCCAACCAAACGCCGAACCCGTTAACGGCGTCTCCACAAGAGACGTAACCGTCGACGCCGAGCGTAACCTCTGGTTCCGCCTCTTCACCCCCACCGACTCCGCCGTCGCCGCCGACTGCGCCTCCCTTCCTGTCGTAGTATTCTTCCACGGCGGCGGCTTCGCGTACCTCTCCCCTGCCTCGTTTGCCTACGACGCCGTATGCCGGCGGTTCTGCCGGAGAATCCCCGCCGTCGTCGTCTCCGTCAACTACCGCCTCTGCCCGGAGCACCGGTTCCCTTCCCAGTACGACGATGGTGAGGCAATTCTCCGGTATCTCGATGACGCCAGCATCTCCGNCCTGCCGGGAAATGCTGACGTGGCAAAATGCTTCCTCGCCGGCGACAGCGCTGGAGCCAATTTGGCATACCACGTTTCGGTCCGGGTTTGCCGGGCGGGGCTCCGGAGGATCCGGGTCGCCGGGGTGGTTTCTATACAGCCGTTCTTCGGCGGGGAGGAGCGGACGGAGGCGGAGGTTCGGCTTGAGGGGTCGCCGCTGGTGTCGATGGTGAGGACGGATTGGCTATGGAAGGCTTTTTTGCCGGATGGGTCGGATCGAGATCACGGGGCGGCGAATGTGAGCGGGCCGAATTCGGAGGATTTGTNGGGTCTGGATAATTACCCGGATACCCTTGTGTTTGTGGGTGGGTTTGACCCGTTACAAGATTGGCAAAAGAGGTACTATGAGTGGTTGAGGAAACAAGGGAAAGAGGCTCAGCTTATTGAGTACCCTCACATGATTCATGCTTTTTATGTGTTCCCTGATTTGCCCGAGTCCTCTCAGTTGATTTCACAAGTCAAGGATTTCATCAACAAGAGAGTCTCCAATTTGAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00747	64829	65851	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000747s00029093.1	PF07859.8	Abhydrolase_3	95	313	1.90E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.380
SRR1783600	control	21.588
SRR1783602	moderate drought stress	10.786
SRR1811619	moderate drought stress	10.896

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.933
DRR006520	Root Summer glycyrrhizin high producing strain	10.631
DRR006521	Root Winter glycyrrhizin high producing strain	1.213
DRR006522	Root Winter glycyrrhizin high producing strain	1.616
DRR006523	Root Summer glycyrrhizin low producing strain	18.892
DRR006524	Root Summer glycyrrhizin low producing strain	19.312
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.386
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.094

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.537
SRR2868004	Drought Stress (root)	35.014
SRR2967015	Control (root)	37.534

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.166
SRR9715740	Leaf	5.083
SRR9715741	Leaf	14.877
SRR9715739	Root	53.544
SRR9715742	Root	34.212
SRR9715743	Root	36.094

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.647
SRR8749028	MeJA induced 9h	1.175
SRR8749029	MeJA induced 9h	0.456
SRR8749030	Uninduced	3.852
SRR8749031	Uninduced	2.273
SRR8749032	Uninduced	3.453

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	55.830
SRR8400027	Control - Root	49.884