Gene detail information of Glyur000747s00029089 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G08450.3 | 0 | |
| NR | XP_004512630.1 | 0 | PREDICTED: zinc finger CCCH domain-containing protein 13-like isoform X3 [Cicer arietinum] |
| trEMBL | tr|V7C4Z7|V7C4Z7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW24453.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00747 | 38107 | 45781 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000747s00029089.1 | PF08642.5 | Rxt3 | 522 | 567 | 1.00E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.844 |
| SRR1783600 | control | 22.110 |
| SRR1783602 | moderate drought stress | 23.166 |
| SRR1811619 | moderate drought stress | 23.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.329 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.130 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.241 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.020 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.655 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.165 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.153 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 49.151 |
| SRR2868004 | Drought Stress (root) | 65.598 |
| SRR2967015 | Control (root) | 76.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.628 |
| SRR9715740 | Leaf | 13.340 |
| SRR9715741 | Leaf | 14.410 |
| SRR9715739 | Root | 1.642 |
| SRR9715742 | Root | 8.902 |
| SRR9715743 | Root | 7.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.316 |
| SRR8749028 | MeJA induced 9h | 40.565 |
| SRR8749029 | MeJA induced 9h | 22.079 |
| SRR8749030 | Uninduced | 23.008 |
| SRR8749031 | Uninduced | 29.911 |
| SRR8749032 | Uninduced | 15.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.879 |
| SRR8400027 | Control - Root | 31.976 |