Gene detail

Database	Orthologs	E value	Annotation
TAIR	AT4G15093.1	4.00E-100	catalytic LigB subunit of aromatic ring-opening dioxygenase family
NR	KHN24452.1	2.01E-177	4,5-DOPA dioxygenase extradiol-like protein [Glycine soja]
COG	YP_007511598.1	2.00E-76	extradiol ring-cleavage dioxygenase [Bradyrhizobium oligotrophicum S58]
Swissprot	tr\|Q949R4\|DIOXL_ARATH	5.00E-125	Extradiol ring-cleavage dioxygenase
trEMBL	tr\|I1MQB9\|I1MQB9_SOYBN	8.00E-178	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G33280.1}

Transcript Sequence

Protein Sequence

Scaffold	Start	End	Strand
Scaffold00747	30568	33651	-

Gene family	subfamily
--	--

KO	Enzyme	Enzyme ID	pathway	mapID
K15777	DOPA	EC:1.13.11.-	Betalain biosynthesis	map00965

biological_process

GO:0006725 cellular aromatic compound metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0008198 ferrous iron binding

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000747s00029088.1	PF02900.13	LigB	6	263	2.40E-68

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.974
DRR006520	Root Summer glycyrrhizin high producing strain	14.304
DRR006521	Root Winter glycyrrhizin high producing strain	7.158
DRR006522	Root Winter glycyrrhizin high producing strain	6.992
DRR006523	Root Summer glycyrrhizin low producing strain	4.203
DRR006524	Root Summer glycyrrhizin low producing strain	5.017
DRR006525	Leaf Summer glycyrrhizin high producing strain	64.678
DRR006526	Leaf Summer glycyrrhizin high producing strain	66.006

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	81.949
SRR8400027	Control - Root	69.767