Gene detail

Gene detail information of Glyur000747s00029087

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G15093.1	1.00E-91	catalytic LigB subunit of aromatic ring-opening dioxygenase family
NR	AFK45430.1	1.21E-168	unknown [Lotus japonicus]
COG	NP_903220.1	6.00E-68	hypothetical protein CV_3550 [Chromobacterium violaceum ATCC 12472]
Swissprot	tr\|Q70FG7\|DODA_BETVU	2.00E-120	4,5-DOPA dioxygenase extradiol
trEMBL	tr\|I1L3N6\|I1L3N6_SOYBN	3.00E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G28490.1}

Sequence

Transcript Sequence

>Glyur000747s00029087.1
ATGGGGTCGACGTTGAAATTGAAGGAAACGTTCTACATATCGCATGGATCACCCACACTTGCCATAGATGATACCATCCCCGCTTGGAATTTCCTCAAGAATTGGAAAGAGGTGTTTCCGACGAGACCCTCCGCCATCCTCATCGTCTCCGGCCATTGGGACACCGATGTCCCCACCGTCAATCTTAAGTACCCAGCAGCAGGGGCTCCACACTTGGCAGAGAGGGTGAAGGAGCTACTCNCAACATCAGGGTTCAGCCATGTGGGTGAAGATAAGAAACGTGGGCTTGACCATGGTGCTTGGGTGCCTCTNATGTTGATGTACCCAGAAGCAGANATCCCAGTTTGCCAACTCTCTGTNTCATCCACCAGAGGTGGCACTTANCACTACAACATGGGAAAGGCATTGGCACCTCTTAAGGATGAAGGGGTTCTAATCATTGGCTCTGGGAGTGCCACCCATAACCTCAGTGCAATGGGGCCTCGTGATACTCCTCCTCCTCCCTGGGCTGTGGCATTTATATATGAGGAAGTAAATCAATATGAAGAGAAGGCTCCATATGCNAAAATGGCNCATCCCTGGCCAGATCACTTTTTTCCATTGCATGTGGCAATGGGGGCTGCTGGTGAAAATGCAAAGGCCAAAGTTATCCATGATAGTTGGGATGTTGGTTCTGTATTTTGTTACACAAGTTCATCAACAACGAAAGAGGAGAAGAAGAACATAGAAAGTGGTGGTTCCGAAAGAACAATAGAAGAAGAAGAAGAAGAGAACAACAGCAACAACAACATCATCATGGGGTCAATGTTGAAATTGAAGGAGACGTTCTACATATCGCATGGATCACCAACACTTGCCATAGATGATTCAATCCCAGCTTGGAATTTCTTGAAGAATTGGAAAGAGGTGTTTCCGGTGAGACCCTCCGCCATCCTCGTCGTCTCCGGCCACTGGGACACCGATGTCCCCACCGTCAACGTCGTTGACCGAAACGACACCATCTACGATTTCTATGGTTTCCCCAAATCCATGTACAAGCTCAAGTATCCAGCAGCAGGGGCTCCACACTTGGCAAAGAGAGTGAAGGAGCTACTCAACGCATCAGGGTTCAGTCGTGTGGATGAAGATAAGAAACGTGGGCTTGANCATGGTGCTTGGGTGCCTCTAATGTTGATGTACCCAGAAGCAGACATCCCAGTNTGNCAACTCTCTGTCTCATCCACCAGAGGTGGCACTTATCACTACAACATGGGAAAGGCATTGGCACCTCTTAANGATGAAGGGGTTCTAATCATTGGCTCTGGGAGTGCCACCCATAACCTCAGAGCAATTGGACCTCGTAATAGCCCTCCTGCTCCTTGGGCTGCTGCATTTATGTCCTGGTTAAAAACCTCTCTTCTTGATGGAAGATATGAGGAAGTAAATCGATATGAAGAGAAGGCCCCATATGCNAAAATGGCTCATCCNTGGCCAGATCACTTNTTNCCATTGCATGTGGCAATGGGGGCTGCTGGTGAAAATGCAAAGGCCAAAGTTGTCCANGATAGTTGGGATGGTGGTTCTATGTCTTATGCTTCTTTTGGTTTTACNGCAGCCACTACCAGTTGATGCAACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00747	19686	28321	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15777	DOPA	EC:1.13.11.-	Betalain biosynthesis	map00965

Gene Ontology

biological_process
GO:0006725 cellular aromatic compound metabolic process

molecular_function

GO:0008198 ferrous iron binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000747s00029087.1	PF02900.13	LigB	10	226	1.50E-38
Glyur000747s00029087.1	PF02900.13	LigB	275	529	1.20E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.734
SRR1783600	control	21.393
SRR1783602	moderate drought stress	13.403
SRR1811619	moderate drought stress	14.181

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.081
DRR006520	Root Summer glycyrrhizin high producing strain	7.177
DRR006521	Root Winter glycyrrhizin high producing strain	10.051
DRR006522	Root Winter glycyrrhizin high producing strain	9.996
DRR006523	Root Summer glycyrrhizin low producing strain	10.117
DRR006524	Root Summer glycyrrhizin low producing strain	8.751
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.774

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.745
SRR2868004	Drought Stress (root)	2.534
SRR2967015	Control (root)	3.600

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.100
SRR9715740	Leaf	15.004
SRR9715741	Leaf	38.823
SRR9715739	Root	15.043
SRR9715742	Root	26.708
SRR9715743	Root	22.871

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.074
SRR8749028	MeJA induced 9h	0.305
SRR8749029	MeJA induced 9h	0.193
SRR8749030	Uninduced	0.125
SRR8749031	Uninduced	0.436
SRR8749032	Uninduced	0.355

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.580
SRR8400027	Control - Root	38.537