Gene detail information of Glyur000746s00026705 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17680.1 | 6.00E-62 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | XP_003613569.1 | 0 | Disease resistance-like protein [Medicago truncatula] |
| COG | YP_001521340.1 | 3.00E-09 | WD repeat-containing protein [Acaryochloris marina MBIC11017] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 2.00E-68 | TMV resistance protein N |
| trEMBL | tr|G7K9Q6|G7K9Q6_MEDTR | 0 | Disease resistance protein {ECO:0000313|EMBL:AES96527.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00746 | 93942 | 101805 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000746s00026705.1 | PF00931.17 | NB-ARC | 34 | 142 | 5.40E-14 |
| Glyur000746s00026705.1 | PF00931.17 | NB-ARC | 188 | 446 | 5.30E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.348 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.424 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.783 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.760 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.264 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.479 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.456 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.090 |
| SRR2868004 | Drought Stress (root) | 8.565 |
| SRR2967015 | Control (root) | 4.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.884 |
| SRR9715740 | Leaf | 2.985 |
| SRR9715741 | Leaf | 7.719 |
| SRR9715739 | Root | 0.487 |
| SRR9715742 | Root | 4.669 |
| SRR9715743 | Root | 4.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.025 |
| SRR8749028 | MeJA induced 9h | 0.634 |
| SRR8749029 | MeJA induced 9h | 0.227 |
| SRR8749030 | Uninduced | 0.104 |
| SRR8749031 | Uninduced | 0.047 |
| SRR8749032 | Uninduced | 0.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.748 |
| SRR8400027 | Control - Root | 2.966 |