Gene detail

Gene detail information of Glyur000744s00021943

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77320.1	0	transcription coactivators
NR	XP_003548358.1	0	PREDICTED: DNA topoisomerase 2-binding protein 1-A-like isoform X1 [Glycine max]
Swissprot	tr\|O04251\|Y4211_ARATH	3.00E-07	BRCT domain-containing protein At4g02110
trEMBL	tr\|V7CTD0\|V7CTD0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW33452.1}

Sequence

Transcript Sequence

>Glyur000744s00021943.1
ATGATGTTGAAGACGAAGGCATTTCAAGGCGCAAACGTGTTCATGTCGCGAAACCTGGTGCCGCCCGAAGTCTTCGACGCGCTCCACGACGCCGTCAAAGATAACGGCGCCCTAATCCACCTTTGCTGCGATCCTTCCCGTAACGGCCCCAACGATTACCACATCATTTCTTCCAGTAAACACGAAAAGTTTGAGGATCTTAAATCCAAGGGCTGTAAATTGCTCGGTCCTAGATGTGTTCTTTCGTGTGCTAAAGAACAAAGGCCCCTGCCTAAACAAGGCTTCACTTGTTGCCTTGCTATGGATGGTGTCAAAGTACTTGCCTCTGGCTTTGATGCTGATGAGAAGGTTAAGATAGAAGAGTTAGTGACTGAAATGGGGGGAGCTCTACAGACTAAAACATCACTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTAGCTGCAAAATACAAGTGGGCTTTGAATATCCTGAAGAAACCAATAGTTACTTATGAGTGGTTAAAGCAATGCTCAGACGAGCANCGGGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTGACTGGAATCCCAGCAGAAAAGCGCAAAGAGATGGAAAAGCTTATTCTACAAAATGGTGACAAATATAAGGTGGCAAAACGTTGGGGCCACATTCATATTGTGACAAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGGATGTCTGAGTGAGGAGTCCTACCCCGTTCAAAGTGGATCTTTATCTTCACATAAAGTAACTAGGGACTTAACAGTGCAACATAGCCAGGAAAAGAATATTGGGAAAATGCAATCTATGGCATCCTCAGGAGCTATAGATTCAAACATGCCAGCTTTTTCTTGCGCTGAGTCTATGGATGTAGATCTAGAAGCTACACAGTCATCACTTGTGTCCTCTGTTTCAAATGTTGTCAAAGAGGCAGATGCTGAAGCACCTCCATTACAGACGAGCAATGAATTAAACTTAGATGGTGCTGTTGCTAATGATTCTGAATCTGATGACAATGACCTGTACTTATCAGAGTGCAGAATATTACTTGTTGGTTTTGAAGCTTCTGAAATGAGGAAGCTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGCTATATGTCTTTTAATGACAAGTTGACACACATAGTAATTGGGAATCCTACAGAAATGGAAAAGAAGGATGTAAGGAGTCTCGCTGCTTTGGGTGTCATTTATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCGTGAAAAGAAAAAAGTCCCTGTTCTTCGGCGGCACATTGCATATGACGTACTTCTTCCAAAAGCTAACTTGGTAAAAGGAGCAGTAACAGGCATTATGCCCATGGATCAAGGTAAAAGCTCAGGCTTTCATCAAAGCTTGCAGGCTGATCAGGTGGTGGGTATTAAGGACTTTGGAGATGTAATGCCAGAATGTTTGGAGAAAAAACAAGAGAAACCAGATATGGGTATAAATGTTCTCACATTAAGTAAAGCAAAGGGCAGGCAGCAAAATCAACTTCCTGATAATAAGCTGAGGGTTCGAAAGATGACACAAAATGACTCCAATTCACATGTGAAGNCAACAAATATTTTCAGAGGGAAAACATTTTGTTTTTCAAATTCATTTCCTGATGAAAAGAGTGTCCACTATACTATTGAGCGTCATGGTGTAAAACCCAGGTTGACAGGTGATTATGCAAGTACATACGTTTCCAGTCACTGGGTACGATCTTGTTTGGAGGATGGATCCTTGCTGGATGTTGACAGTCACATTATTTATTCTCCACTTCCCTGCTGTGTTCCCTTGCCTGGTTTTGAAAGCTTCTGGTTTTGTGTTTCACAATATGAGGTGAAAGACAGAAATCTACTTAGGAACTTGTGCCATGTTCTAGGAGCTAAAAAATTTGGGGAGAAGTTGACTAAGAAGGTCACCCATTTATTGTGTAAATTCACCAATGGGCCCAAGTACGATGCTGCTTGTAAGTGGGGGATCCAATCANTTACATCTGAATGGATATTTGAATGTGTCAAACAGAATGGAGTTATTGCCATCGATCAATTTTTACCCAAAGAAGTCACTACTCAAGACCAAGAGGCAGGAATTTGCACTGCAAGGCTTGTGGAAGAGCCTGGCCTGTATAACAAGGTGCCATCCGAAGTAAATTCAGGTATTCATGTATCTGAAATGGACTTTTCTAAAGACAATATACNCAATGATGCTGGGGAGGTTATGCATACTGTTCCTGATGTTGCTGCTGCAATTGAAGACCTGCTAGAGCAGACAAGTAAGATGCATGATCAAAGGTCCCCAGGGAGTACAGGGTGCGAGAGAAGTGTATCCTTCAAAAGTGGCAGTAAAGATGATAATGGTGAGGCTTTTCAAGACAGAAGAGCAGGAATGTATGATGGTTTTAGTGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTGTCAGGAAGGCAAATGCTTATAGATAGAGTCCGAACTAGAATCAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00744	79885	92307	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000744s00021943.1	PF00533.21	BRCT	102	171	3.30E-06
Glyur000744s00021943.1	PF00533.21	BRCT	351	427	4.60E-05
Glyur000744s00021943.1	PF12738.2	PTCB-BRCT	625	686	2.00E-15
Glyur000744s00021943.2	PF00533.21	BRCT	102	171	3.50E-06
Glyur000744s00021943.2	PF00533.21	BRCT	351	427	5.00E-05
Glyur000744s00021943.2	PF12738.2	PTCB-BRCT	625	686	2.10E-15
Glyur000744s00021943.3	PF00533.21	BRCT	102	171	3.50E-06
Glyur000744s00021943.3	PF00533.21	BRCT	351	427	5.00E-05
Glyur000744s00021943.3	PF12738.2	PTCB-BRCT	625	686	2.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.364
SRR1783600	control	2.449
SRR1783602	moderate drought stress	1.963
SRR1811619	moderate drought stress	1.998

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.570
DRR006520	Root Summer glycyrrhizin high producing strain	1.615
DRR006521	Root Winter glycyrrhizin high producing strain	4.195
DRR006522	Root Winter glycyrrhizin high producing strain	4.280
DRR006523	Root Summer glycyrrhizin low producing strain	2.325
DRR006524	Root Summer glycyrrhizin low producing strain	2.512
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.308
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.388

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.891
SRR2868004	Drought Stress (root)	3.577
SRR2967015	Control (root)	4.362

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.857
SRR9715740	Leaf	2.849
SRR9715741	Leaf	1.985
SRR9715739	Root	0.209
SRR9715742	Root	0.468
SRR9715743	Root	0.791

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.879
SRR8749028	MeJA induced 9h	10.079
SRR8749029	MeJA induced 9h	7.958
SRR8749030	Uninduced	8.543
SRR8749031	Uninduced	10.313
SRR8749032	Uninduced	6.057

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.434
SRR8400027	Control - Root	4.777