Gene detail

Gene detail information of Glyur000744s00021931.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G21780.2	8.00E-138	BTB/POZ domain-containing protein
NR	KEH40519.1	0	BTB/POZ domain plant protein [Medicago truncatula]
Swissprot	tr\|Q9XHZ8\|Y1178_ARATH	4.00E-172	BTB/POZ domain-containing protein At1g21780
trEMBL	tr\|A0A072VES8\|A0A072VES8_MEDTR	0	BTB/POZ domain plant protein {ECO:0000313\|EMBL:KEH40519.1}

Sequence

Transcript Sequence

>Glyur000744s00021931.1
GTGTGATCTAAGCTTTGCAGAAAAAGTAAAAGCAATTTCCTCCAATTTCCGGCACACATCAACCACTGCAAACTTTAGTGAGGACCCAAGTGAGGATGCTTATAGGCAAAGTCAATCTCTGGTCTCTTCGGTGCGCATCTGTTGTATCGTTCGGTCTTTGCAATCTCTAAACAGCCAACTGAGCCAAGAGAGAAGACATGGGTGATTCAAAGGTGGAGACAATTGCCCGATTAGCCCAATGGAAAATCGACAACTTCGGACCCTGTTCCTACAAGAAATCCGACCCTTTCAAGCTCGGAATTTGGAACTGGTACTTGTCCATAGAGAGAAACAGGTATCTCTACATTCATCTTTTCCCTGAGCCTTCCAAGGTTTCTAAGGAACACCCACCCGTCGCTCGCTTCATTGTCCGCGTCTCCAACACTGGCTCCTCCCGCAAATTCTACATTTCCCCTGGTCTTTCTTCTTCCTCTTCTGACACTTTTTGCCTTGTTGGGTATTTGTCAAATTTTAATCTTGTGTGCTGCTTATATGAAATGAGCTTTTACAAGCTCTATTTTTATGAAAGGATACTTAAGACATGTGATGACTTTGTCTGGCCTGTGGATACTACATTCCTTGGTCGNTTCATTATTGATGTTGAATTTCTTGACCTGAGGATCAGCTGCCCTCTGAATGGTGGAGAAGGCAGTTCCATATGGCCATCTGATGGAAAACTGCAATCTGTTGCAACTCAAAGCACTCTCCAATGCCTCTCCCGCATGCTCGACGAAGCAATACATGCTGACCTCACCATTATAACNATGGATGGTACACTGAGGGCTCACAAGGCAGTTCTGTCCGCAACTTCTCCAGTGTTCCAGGGCTTGTACCACGACAGNGGGGAGGAGAAAGAGTCATCAACAATCCACATAGAAGACATGTCACAGGAATCCTGCATGGCCTTTCTGNGTTACTTGTACGGCACAATAAAACAAGAAGATTTCTGGAAGCACAGGCTTGCATTGCTTGGAGCAGCCAATAAATATGACATTGGTGATCTCAAAGATGCCTGTGAGGAAAGCCTACTGGAAGATCTTAACTCAGGAAATGTTCTGGATAGGCTGAATGAGGCTTGGGTGTACCNGTTGCACAAGTTAAAGAAAGGGTGTTTCACGTTCTTATTTGATTTNGGTAAGATATATGATGTTAGAGATGAAATAAATACCTTTTTTCGTCATGCGGATAGGGAGCTAATGCTGGAGATGTTTCAAGAAGTGCTNATAATTTCGAAATAGTTTATATCATGGAACTCTTCTCGGCACCCTTGTATCTTGTAAAGTGAGGGATCCATGTGTATAATCATGTTTGTANTTTTTAGTACTATATTACTCTCTTCAATAACCTAGCGGTTAAAGTATCGGATGAGGAAGTACATTATCCTGTAAATAATGGCAAGTTGAGTTTTTTTTTTTTGGTTACAATGACTACAATGAGAATTGANTGTATGGCTCTGGGTCATTTTCTAGGACAAGGTAACTTCATCATGCATATGCTTGCTGTTTAGGAGGTCAGGCATATATTGCAAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00744	25092	27560	+

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	BTB
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000744s00021931.1	PF00651.26	BTB	189	293	8.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.105
SRR1783600	control	38.182
SRR1783602	moderate drought stress	41.491
SRR1811619	moderate drought stress	41.137

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.631
DRR006520	Root Summer glycyrrhizin high producing strain	42.108
DRR006521	Root Winter glycyrrhizin high producing strain	22.150
DRR006522	Root Winter glycyrrhizin high producing strain	21.104
DRR006523	Root Summer glycyrrhizin low producing strain	37.650
DRR006524	Root Summer glycyrrhizin low producing strain	37.698
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.652
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.344

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.561
SRR2868004	Drought Stress (root)	35.435
SRR2967015	Control (root)	35.167

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.283
SRR9715740	Leaf	35.057
SRR9715741	Leaf	33.597
SRR9715739	Root	16.899
SRR9715742	Root	27.474
SRR9715743	Root	27.367

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.486
SRR8749028	MeJA induced 9h	11.350
SRR8749029	MeJA induced 9h	11.788
SRR8749030	Uninduced	7.422
SRR8749031	Uninduced	4.384
SRR8749032	Uninduced	6.618

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.897
SRR8400027	Control - Root	49.397