Gene detail information of Glyur000744s00021930 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75630.1 | 3.00E-58 | vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 |
| NR | AFK34360.1 | 9.82E-108 | unknown [Lotus japonicus] |
| COG | NP_345779.1 | 7.00E-09 | V-type ATP synthase subunit K [Streptococcus pneumoniae TIGR4] |
| Swissprot | tr|P59229|VATL4_ARATH | 4.00E-109 | V-type proton ATPase subunit c4 |
| trEMBL | tr|I3S268|I3S268_LOTJA | 4.00E-108 | Uncharacterized protein {ECO:0000313|EMBL:AFK34360.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00744 | 21224 | 23597 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000744s00021930.1 | PF00137.16 | ATP-synt_C | 13 | 77 | 5.70E-13 |
| Glyur000744s00021930.1 | PF00137.16 | ATP-synt_C | 92 | 156 | 1.70E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 77.423 |
| SRR1783600 | control | 79.121 |
| SRR1783602 | moderate drought stress | 46.852 |
| SRR1811619 | moderate drought stress | 46.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 110.135 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 109.386 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 142.725 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 140.059 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 73.021 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 73.454 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 71.833 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 73.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 243.715 |
| SRR2868004 | Drought Stress (root) | 203.939 |
| SRR2967015 | Control (root) | 182.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 200.454 |
| SRR9715740 | Leaf | 160.122 |
| SRR9715741 | Leaf | 185.239 |
| SRR9715739 | Root | 136.039 |
| SRR9715742 | Root | 132.380 |
| SRR9715743 | Root | 128.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.604 |
| SRR8749028 | MeJA induced 9h | 41.027 |
| SRR8749029 | MeJA induced 9h | 32.967 |
| SRR8749030 | Uninduced | 42.122 |
| SRR8749031 | Uninduced | 22.004 |
| SRR8749032 | Uninduced | 35.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 224.013 |
| SRR8400027 | Control - Root | 256.968 |