Gene detail information of Glyur000743s00019292 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07990.1 | 0 | serine carboxypeptidase-like 27 |
| NR | XP_006589433.1 | 0 | PREDICTED: serine carboxypeptidase-like 27-like [Glycine max] |
| COG | YP_002430787.1 | 1.00E-12 | peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01] |
| Swissprot | tr|Q9SFB5|SCP27_ARATH | 0 | Serine carboxypeptidase-like 27 (Precursor) |
| trEMBL | tr|I1LD24|I1LD24_SOYBN | 0 | Carboxypeptidase {ECO:0000256|RuleBase:RU361156} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00743 | 56855 | 61744 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000743s00019292.1 | PF00450.17 | Peptidase_S10 | 37 | 159 | 2.10E-48 |
| Glyur000743s00019292.1 | PF00450.17 | Peptidase_S10 | 208 | 462 | 8.80E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.937 |
| SRR1783600 | control | 6.948 |
| SRR1783602 | moderate drought stress | 5.500 |
| SRR1811619 | moderate drought stress | 5.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.908 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.762 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.336 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.353 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.331 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.156 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.436 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.963 |
| SRR2868004 | Drought Stress (root) | 21.157 |
| SRR2967015 | Control (root) | 20.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 43.315 |
| SRR9715740 | Leaf | 31.692 |
| SRR9715741 | Leaf | 32.979 |
| SRR9715739 | Root | 4.279 |
| SRR9715742 | Root | 10.724 |
| SRR9715743 | Root | 8.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.029 |
| SRR8749028 | MeJA induced 9h | 13.561 |
| SRR8749029 | MeJA induced 9h | 8.713 |
| SRR8749030 | Uninduced | 3.658 |
| SRR8749031 | Uninduced | 0.867 |
| SRR8749032 | Uninduced | 1.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.303 |
| SRR8400027 | Control - Root | 22.288 |