Gene detail

Gene detail information of Glyur000743s00019286

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07950.1	6.00E-92	rhomboid protein-related
NR	XP_003591941.1	0	Transmembrane protein [Medicago truncatula]
trEMBL	tr\|G7I9J5\|G7I9J5_MEDTR	0	Transmembrane protein, putative {ECO:0000313\|EMBL:AES62192.1}

Sequence

Transcript Sequence

>Glyur000743s00019286.1
AATTAAATAATTAACTAATAATATTACCTGTGGGCGTGGGTATAGACGACGTATAGTGCATAGCATAGGTTGGGTGGATTCAGATCTTGGTGGAAGTGAAGAAGAGAAGTGAATCTCATCGTCATCGTCATCGTCATCGTCATCATCGTCTTCATCTTCAGATATTCAGAGATTGAGATCGAGATAGAAGGGTGGTCCATTATTCCATATCGATGAGCACGCCACCTCTCCCACAGTCACAGTCACAGGGCACGAGAGTGTTGTCTGTGTCTGGATTCACGCACCTCTGCAAGGGTCTCTCAGTGGTCCTCCTCGCCGCACACNTTCTCCTCCATTTCCTCCCTTCCGCTCTCTCCTACCTCGCCCTCATTCCCGCCAAGACAATCCCATTTGCCTGGAACCTCATTACTGCCGGTTACGTCGAACAGTCTGTACATGGGGTAGTTATCAGCATAGTTTGTCTCTTGTTCATTGGCAAGCTCCTTGAACCAGTATGGGGTCCCAGGGAATTCCTCAAGTTCATCTTCCTAGTTAACTTCTTGACCTCTCTCTGCATCTTCATCACTGCTATTGCTTTCTACTACATTACAAGACAGGAGAACTATCTTTATATGCCGCNTTCTGGATTTCANGGAGTTATCNCTGGCTTCTTGGTTGGCGTCAAGCAAATTATACCAGATCAAGAGCTTCCTCTCCTCAAGATAAAAATGAAGTGGTTACCATCTATCAGTTTATTGTTTTCTATTGCCATGAGCTTCTGGATACTAGAGGCAACAGCATATCTTCCAACTGTAATATTTGGTACATATATGAGCTGGATTTACCTCAGATACTGGCAGAGGAAGCCAGAAACAAAGCTTAAGGGTGACCCGAGTGAGGATTTTGCATTCTCTTCCTTTTTCCCAGAGATTTTAAGACCGGTAATAGACCCTGTTGCATCAATATTTCATCGAATGCTCTGTGGAAGATCTGATGCTTCTAATGATGATGCTCAAGGTCACACTCTGGGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAGGCAACTAGGAGACGGGAAAGAGGTGCCCGAGCACTGGAAGAAAGGTTGGCTGCGGAGAGGTTGGGTACTTCACGTAGTGCAGGGGAGCTGCACACAAGTGCTGCAGAAAATGTATAATTCCCTATATTTTGTAAATTCAGATAATTTCAGCCAATATGAAACTATCATGAGCGACATTTTNACAGGTGATACAGAAATGAGAAAATTTTTGTTTATCTTCAAGCAAAATTTTAATTTGCATTTCGTCTTTGGACTGTGATCCTCATGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00743	33428	35889	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000743s00019286.1	PF08551.5	DUF1751	54	152	8.40E-31
Glyur000743s00019286.2	PF08551.5	DUF1751	108	203	1.00E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.366
SRR1783600	control	32.215
SRR1783602	moderate drought stress	18.392
SRR1811619	moderate drought stress	18.696

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.264
DRR006520	Root Summer glycyrrhizin high producing strain	27.936
DRR006521	Root Winter glycyrrhizin high producing strain	29.891
DRR006522	Root Winter glycyrrhizin high producing strain	29.023
DRR006523	Root Summer glycyrrhizin low producing strain	12.009
DRR006524	Root Summer glycyrrhizin low producing strain	11.956
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.962
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.981

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.271
SRR2868004	Drought Stress (root)	21.967
SRR2967015	Control (root)	24.897

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.839
SRR9715740	Leaf	6.630
SRR9715741	Leaf	7.164
SRR9715739	Root	18.329
SRR9715742	Root	18.727
SRR9715743	Root	19.325

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.029
SRR8749028	MeJA induced 9h	26.516
SRR8749029	MeJA induced 9h	22.766
SRR8749030	Uninduced	6.922
SRR8749031	Uninduced	4.967
SRR8749032	Uninduced	5.873

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.849
SRR8400027	Control - Root	49.700