Gene detail information of Glyur000742s00025076 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05220.1 | 4.00E-49 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_003536560.1 | 7.32E-85 | PREDICTED: protein NDR1-like [Glycine max] |
| Swissprot | tr|Q9C615|SYP24_ARATH | 1.00E-09 | Putative syntaxin-24 |
| trEMBL | tr|K7LLD3|K7LLD3_SOYBN | 4.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G39850.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00742 | 86528 | 86965 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000742s00025076.1 | PF03168.8 | LEA_2 | 18 | 122 | 9.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.678 |
| SRR1783600 | control | 0.587 |
| SRR1783602 | moderate drought stress | 0.667 |
| SRR1811619 | moderate drought stress | 0.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.740 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.559 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.639 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.626 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.337 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.273 |
| SRR2868004 | Drought Stress (root) | 9.392 |
| SRR2967015 | Control (root) | 7.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.455 |
| SRR9715740 | Leaf | 0.041 |
| SRR9715741 | Leaf | 0.520 |
| SRR9715739 | Root | 3.189 |
| SRR9715742 | Root | 3.437 |
| SRR9715743 | Root | 3.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.005 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.277 |
| SRR8400027 | Control - Root | 1.929 |