Gene detail information of Glyur000742s00025064 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54770.1 | 2.00E-133 | thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) |
| NR | AFK49632.1 | 0 | unknown [Lotus japonicus] |
| COG | YP_006862753.1 | 5.00E-50 | thiazole biosynthetic enzyme [Candidatus Nitrososphaera gargensis Ga9.2] |
| Swissprot | tr|F6H7K5|THI42_VITVI | 0 | Thiamine thiazole synthase 2, chloroplastic {ECO:0000255|HAMAP-Rule:MF_03158} (Precursor) |
| trEMBL | tr|I3TAU0|I3TAU0_LOTJA | 0 | Thiamine thiazole synthase, chloroplastic {ECO:0000256|HAMAP-Rule:MF_03158} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00742 | 34788 | 36884 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000742s00025064.1 | PF01946.12 | Thi4 | 70 | 303 | 3.70E-105 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 351.998 |
| SRR1783600 | control | 354.896 |
| SRR1783602 | moderate drought stress | 628.983 |
| SRR1811619 | moderate drought stress | 619.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1743.627 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1721.357 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 104.479 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 101.363 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1487.502 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1488.203 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4513.564 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4488.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 113.907 |
| SRR2868004 | Drought Stress (root) | 40.162 |
| SRR2967015 | Control (root) | 104.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 45.534 |
| SRR9715740 | Leaf | 136.501 |
| SRR9715741 | Leaf | 45.054 |
| SRR9715739 | Root | 134.922 |
| SRR9715742 | Root | 437.956 |
| SRR9715743 | Root | 388.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.414 |
| SRR8749028 | MeJA induced 9h | 0.249 |
| SRR8749029 | MeJA induced 9h | 0.290 |
| SRR8749030 | Uninduced | 0.212 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 251.812 |
| SRR8400027 | Control - Root | 365.035 |