Gene detail

Gene detail information of Glyur000741s00030651.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10030.1	1.00E-166	aspartate/glutamate/uridylate kinase family protein
NR	XP_004497592.1	0	PREDICTED: uridylate kinase-like [Cicer arietinum]
COG	YP_004113045.1	7.00E-74	uridylate kinase [Desulfurispirillum indicum S5]
Swissprot	tr\|Q9LJG8\|ASIL2_ARATH	3.00E-16	Trihelix transcription factor ASIL2 {ECO:0000305}
trEMBL	tr\|V7BJN9\|V7BJN9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17260.1}

Sequence

Transcript Sequence

>Glyur000741s00030651.1
GTTTACTCTTTAAACAAATATACAATATTTTATTATTTTTTGAAAAATGATCACTATTTTTTTTTCTCAATGCCGTACTGGCAAGGTTGGCCCAAAGAAATATTTAGATGAGNAATGGCCCGTTACTGCAGAGGTAGGAGAGCGAAAGCGCGTACAATGCACTTGCTCTTGTCACTTAACGGGACCGTCACCACGCGTCACGGCAAGTACCAGACCAACTCACGGAAGGCACGCTCCGTCAAACCCTCCCACACACACCTTCTCTCAAATCTCAACGCCTCTCTCTCTTTCCCTAACGTCCCCAACGACGCCGTTCCCTCAAACCTTAACGTCCTCTTCCCCCTTTACCCTTATGGCCTCTTGCGACGACGACGACGATTTCTCACTCCTCCGTGACGACAACCACCACCACCTCCAACCCTACGCGCCTCACCACCACCACCACTTCTCCACCGCCTCCGTCCAAACCAAACCCGTCGCCGACGACGACGCCGAAGATTACGGAAATCCGTTCGACGACGACGCCGGGAGCGAGAAACGAAAGGAGCACGAGGAGATCGGCGACGGAACGTCGCCGTCGCCGTACGGGTTTAACAAGAGACCAAAGGCGGTTTCCAGTGTCAGCGGCGGCGGCGGCGGAGGAGTCGGAGGAGGAGAGTACAGGAAGGATCGGGAAGAGTGGAGCGACACGGCGATCGTGTGCTTGCTTGAGGCGTACACGGACAAGTTCACGCAACTGAATCGGGGGAACCTTAGGGGAAGGGATTGGGAGGAGGTGGCAGCGGTGGTGAGCGAGCGTTGCGAGAACCAAACGAAGAGCGTGGAGCAGTGTAAGAACAAGGTTGATAACCTAAAGAAGCGGTACAAGCTGGAGAGGCATAGGATGAACAATGGATGCATCTCAACTAGTCACTGGCCTTGGTTTAAACAGATGGAACACATCGTCGGAAATTCTCTCCCTTCCAAGTTCGCCGAAGAGGATAAAGCCATTGTTCCTGCCACCAATTCACCTAGGCAATCCAAGAGATATGGAGTGGCAACGTCCAGCAGTGGAGGTCAAGTAAACAGCCTGAAGTCCAAAGCATTGTCAAACCTTAGATGGCGGAGGGTAGTGCTCAAAATTAGTGGAGCAGCACTTACTGGATCTGATACCTGCAATATTGACCCTAAGGTGGCCATGTTAGTTTCAAGTGAAGTTGCAATAGCTTCCCGCCTTGGTGTGGAGGTGGCGATTGTTGTTGGGGGTCGTAATTTCTTCTGTGGAGATGCATGGGTAAATGCGACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGTATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCAACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGGGCCATCAGACATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGCATTGGTTGTGGTGCCGGGAATCCACTTTTCTCAACTGACATAGCTGCTGCTCTTCGTGCTTCAGAGCTTAATGCTCAGGCAGTCCTCAAAGGTACTAATGTAGATGGTGTCTACGACTGCAACTCCCGAGACAACAATTTCACTTTCGAGCACATATCCTTCAGGGAGCTAGTGTCTAGAGGTGTCACCTCTATGGATATGTCAGCACTGACATTCTGTGAGGAAAATGGTATTCCCGTTGTGGTTTTCAATCTATTGGCGCCTGGGAACATCTCAAAAGCTTTGTGTGGAGAACAAGTTGGCACACTAATTGACCAAACTGGAGCAATAAGCTAACAGTTAATTCAACCGATTCAATTATTATTAGGCAAACAGGAGCCATTGAGTGGGATATGTCCACCACTGAGGTGTTTGGATAAGAAAATATCAAATCTAGACATATTCAGTGTGTATGTGGCAACGTTAGTGGAAATTGTAGAGCTGAAGCCACAAATTCCCTATCCCTATGATTTGTAGGTGGTGGTTGTACTTTTAATATGCATCTGTATAAAAAAAAATGCCCGTGTATATTATTCCCAGATGAGTTGTAGCATAGTAATGTATTAGCACTAGCCTCCTTTTGTTAGTAAATGCAAAACAGAAGTGGAGTAATTCGGCTCAAATTCAGCTTTGTGACTAATAATCACTTCGATTAAGCCCATTTCCCCCTCGGAATTTAGTAGAGGAAAAGAACAGAGTCAAGAGATGAAAAATAAAGAGGAGATAGATTTAAAAAAAAAAATAATTATTCCTTTTAGTGGACCTGGCCACCGGTGGGAGGGGGAAAGTGAATTCTAAACAAAAGCAGAGTACATTATCGGTTTGAATTTGCACACTGTTCATCCAGTTATAGGCTTTCTTTCTCATTCTCATCCAATGTGAAATGTGAAATCTTGTCTTGAGGTTTAAAGTTCCCATGCTTGATAATTTGAAGGTATTCATTAGTTGTAACATGTAAGCTATTTATGGCATGTGGTTAACTCAATGAACTTTCATGGAAATCATGTGCCGCATGCCTAGCTTAGATTTTGAATGCACTTATTAAGCATGTAGTTCGCTTCTAACACGATTCAACGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00741	112018	117322	+

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0033862 UMP kinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000741s00030651.1	PF13837.1	Myb_DNA-bind_4	209	299	1.70E-19
Glyur000741s00030651.1	PF00696.23	AA_kinase	354	564	6.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.788
SRR1783600	control	8.905
SRR1783602	moderate drought stress	12.116
SRR1811619	moderate drought stress	11.970

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.028
DRR006520	Root Summer glycyrrhizin high producing strain	14.532
DRR006521	Root Winter glycyrrhizin high producing strain	17.410
DRR006522	Root Winter glycyrrhizin high producing strain	17.161
DRR006523	Root Summer glycyrrhizin low producing strain	22.690
DRR006524	Root Summer glycyrrhizin low producing strain	22.600
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.344
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.113

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.077
SRR2868004	Drought Stress (root)	17.979
SRR2967015	Control (root)	20.163

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.047
SRR9715740	Leaf	11.713
SRR9715741	Leaf	13.516
SRR9715739	Root	10.474
SRR9715742	Root	10.824
SRR9715743	Root	11.968

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.614
SRR8749028	MeJA induced 9h	27.208
SRR8749029	MeJA induced 9h	16.821
SRR8749030	Uninduced	13.906
SRR8749031	Uninduced	13.536
SRR8749032	Uninduced	14.365

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.405
SRR8400027	Control - Root	23.146