Gene detail

Gene detail information of Glyur000741s00030649

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10040.1	1.00E-59	sequence-specific DNA binding transcription factors
NR	XP_003590397.1	0	hypothetical protein MTR_1g061640 [Medicago truncatula]
trEMBL	tr\|A7UQU9\|A7UQU9_MEDTR	0	Myb/SANT-like DNA-binding domain protein {ECO:0000313\|EMBL:AES60648.1}

Sequence

Transcript Sequence

>Glyur000741s00030649.1
ATGGAAGCCAATGGATTGGGTAGTGGAATGTTTTCTTCTGGCATCAATTCTGGGTTGCTAGGAGTTGAAAACCCTTTACAACAAAACCTTCCCAATCAACAAAACCCTCACCATTTGCACCAAATGGTTAATCCCTATGCACCCCATCATGACACTGATTCACACAACCAACAACAACAACTACAACAACAACCGATGAAACAACATGGGTACCCTCCATTTTCTTCTTCAGCAGCAAAGAACAAGCAACAACAAAGCTCAATCAGTGATGAGGATGAACCTGGGTTCACAGCAGAAGAGTCCTCTGGTGACCCAACAAAGAAAAAGGTTTCACCTTGGCAAAGAATGAAGTGGACTGATACAATGGTAAGGCTCTTGATAATGGCAGTTTACTACATTGGTGATGAGGCTGGTTCAGATCAAGGGACAACAACTGATCCTACTAAGAAGAAGCCCACAGGGTTGCTTCAGAAGAAAGGGAAGTGGAAATCTGTGTCAAGGGCTATGATGGAAAAGGGGTTCTATGTTTCCCCTCAACAATGTGAGGACAAGTTCAATGACTTGAACAAGAGGTACAAGAGGGTGAATGATATACTTGGAAAAGGAACTGCTTGTAGGGTTGTGGAGAATCAGAACCTTTTGGATACAATGGATTTGTCACCAAAGATGAAAGAGGAGGTTAAGAAGTTGCTCAATTCCAAGCACCTTTTCTTCAGGGAAATGTGTGCTTACCATAATAGTTGTGGTCATGGTGGTGGGGCTAATTCTAATTCTAATGTTCAACAACACCAATTGGAGGGTGGAACAAGTACAACACCACCTCAGGCTCAACCACAACAACAGCAGCAGCAGCAACAACAACAACAGCAACAGCAACATTGTTTTCATTCAGCAGAGAATGGGATGGGGAATTTAGGTGGATCAGGAGGAGAGGGTATGAATATGAGGATGTTGAAAATGGGAAATGGGGAAGAGGATGATGATGATGAAGATGAGGATGATGATGAGTCAGAGGACTATTCTGATGAGGATGAGAATGATGAGGATGGACATGAAGATGAAGATGAGAATGATCATGGAAGAATGGGGTCATTGTTGAGGAGGAAGAGGTCAAGGAAAGAAGCAGCAGCAGCATCAGGGTTTTCAACCATATCATTGTCATCAACATCATCATCACAGTTGATGCAACAACTCAACACTGAGGTGAGTGGTGTGTTCCAAGATGGAGGTAGGAGTGCTTGGGAGAAGAAACAATGGATGAGGAACAGGATTATGCAGNTTGAGGAGCAGCAAATAAGCTATCAAACACAAGCTTTTGAGCTTGAGAAGCAAAGGTTGAAATGGGCAAGGTTTAGCAGCAAGAAGGGAAGGGAAATGGAAAGAGCCAAACTTGAAAATGAAAGGAGGAGGCTAGAGAATGAGAGAATGGTTTTGCTCATTCGTCAGAAGGAGCTTGAGTTGCTGAAGATTCAACACCAACAACAACAACAACANCANCAACAACAACAGCAGCAGCAACACTCTTCCACCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00741	93886	95418	+

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000741s00030649.1	PF13837.1	Myb_DNA-bind_4	115	243	1.30E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.726
SRR1783600	control	22.237
SRR1783602	moderate drought stress	4.538
SRR1811619	moderate drought stress	4.455

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.061
DRR006520	Root Summer glycyrrhizin high producing strain	14.195
DRR006521	Root Winter glycyrrhizin high producing strain	413.606
DRR006522	Root Winter glycyrrhizin high producing strain	390.770
DRR006523	Root Summer glycyrrhizin low producing strain	6.692
DRR006524	Root Summer glycyrrhizin low producing strain	6.981
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.795
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.786

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.853
SRR2868004	Drought Stress (root)	3.218
SRR2967015	Control (root)	3.439

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.270
SRR9715740	Leaf	0.115
SRR9715741	Leaf	0.381
SRR9715739	Root	2.883
SRR9715742	Root	7.895
SRR9715743	Root	5.718

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	272.550
SRR8749028	MeJA induced 9h	617.556
SRR8749029	MeJA induced 9h	412.157
SRR8749030	Uninduced	49.273
SRR8749031	Uninduced	104.356
SRR8749032	Uninduced	85.978

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.358
SRR8400027	Control - Root	50.575