Gene detail information of Glyur000741s00030647.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53000.1 | 7.00E-103 | phloem protein 2-A15 |
| NR | XP_003535266.1 | 8.17E-154 | PREDICTED: F-box protein PP2-A15-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LF92|P2A15_ARATH | 2.00E-128 | F-box protein PP2-A15 |
| trEMBL | tr|I1L962|I1L962_SOYBN | 3.00E-154 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G07450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00741 | 63914 | 70200 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000741s00030647.1 | PF14299.1 | PP2 | 62 | 232 | 1.30E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.445 |
| SRR1783600 | control | 8.045 |
| SRR1783602 | moderate drought stress | 10.047 |
| SRR1811619 | moderate drought stress | 10.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.531 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.027 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.721 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.261 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.594 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.402 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.799 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.400 |
| SRR2868004 | Drought Stress (root) | 6.975 |
| SRR2967015 | Control (root) | 7.409 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.462 |
| SRR9715740 | Leaf | 14.397 |
| SRR9715741 | Leaf | 10.892 |
| SRR9715739 | Root | 7.062 |
| SRR9715742 | Root | 7.797 |
| SRR9715743 | Root | 7.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.746 |
| SRR8749028 | MeJA induced 9h | 8.943 |
| SRR8749029 | MeJA induced 9h | 9.087 |
| SRR8749030 | Uninduced | 5.822 |
| SRR8749031 | Uninduced | 3.101 |
| SRR8749032 | Uninduced | 4.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.252 |
| SRR8400027 | Control - Root | 8.896 |