Gene detail

Gene detail information of Glyur000740s00028699

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34120.1	1.00E-68	Cystathionine beta-synthase (CBS) family protein
NR	XP_004505249.1	1.06E-134	PREDICTED: CBS domain-containing protein CBSX2, chloroplastic-like [Cicer arietinum]
COG	YP_007130282.1	2.00E-23	putative signal transduction protein with CBS domains [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q9C5D0\|CBSX2_ARATH	6.00E-85	CBS domain-containing protein CBSX2, chloroplastic (Precursor)
trEMBL	tr\|I1JE13\|I1JE13_SOYBN	1.00E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G11600.1}

Sequence

Transcript Sequence

>Glyur000740s00028699.1
ATGAGTTCGATTCATTTGATCAACACTCTTGGTGTTCCGCTCCGGTCTCTGGCTCCCTCCCTTTTTCCTCAATGCCATTCTCCGCTTCCTTCTTCCGCCGTCCCAAAACGGCGGCGTTTCTCTCACTCCGCTGGGTTCCGCATCGTCTCCGGCCCAACCGTCAATTCGGTCCCACGCGGGAATGGAACTTACACAGTTGCTGATTTCATGACAAAGAAGCAAAATTTGCACGTTGTCAAAACCACCACCACCGTCGATGAAGCTCTGGAGGCTCTCGTAAGCAACAGAATCAGTGGTCTTCCCGTAATAGATGACGACTGGAATCTGGTTGGAGTTGTATCAGATTATGACTTGTTAGCAATTGATACCATATCAGGTGGTACTCAAAGGCAAGGTGATGCAAACTTATTCCCTGATGTCGACAGTTCTTGGCAAGTNAGTACATTCAATGAGATACAAAAGCTGCTTAGTAAGACTAATGGNAAAGTTGTTGGTGACTTGATGACTCCAACTCCACTTGTTGTTCATGAATCGACTAATCTGGAGGATGCTGCCAGGCTGTTGCTGGAAACAAAATATCGCCGGCTACCTGTGGTAGACGAAGATGGGAAGTTGGTTGGACTTATCACAAGGGGAAATATTGTTAAGGCGGCTCTGCTGTCAAAACGTGCTGGTGAGAGGTCCAAATAGTTTGACTTTGACAAACGTAATTCAAGTGGCTTTGCTTTTTGCCAGCACAACCTTGGTATCTTTTGCTTTGTATGTAGTCATCGTCAGGTGGATATTTTGACTATTAAGAATGCGTATATCAGCCCAGAAGAGGAGCTGAAGGCAACTCTTGATGGCCTTTTGAGATCTTTTAAGTAGGTGGTTAATACCATTGAGAGGGAAGTGATTTATCGATCTCCTTCCTCGACATATTTTCTGTGCACTGGATTGCTGCTTGCTTGGAAACATTATATCCAGTTAATCTTTATGCCTTAGCCTCTGTTAAATCTTGACATGTACGAGGTTGGAGTAGATCATTTTGAACACTGTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00740	93350	96731	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000740s00028699.1	PF00571.23	CBS	66	120	3.60E-14
Glyur000740s00028699.1	PF00571.23	CBS	164	217	8.80E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.771
SRR1783600	control	23.677
SRR1783602	moderate drought stress	15.733
SRR1811619	moderate drought stress	15.620

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.942
DRR006520	Root Summer glycyrrhizin high producing strain	23.054
DRR006521	Root Winter glycyrrhizin high producing strain	30.407
DRR006522	Root Winter glycyrrhizin high producing strain	30.831
DRR006523	Root Summer glycyrrhizin low producing strain	21.175
DRR006524	Root Summer glycyrrhizin low producing strain	21.770
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.834
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.888

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.964
SRR2868004	Drought Stress (root)	28.583
SRR2967015	Control (root)	25.375

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.316
SRR9715740	Leaf	31.018
SRR9715741	Leaf	70.477
SRR9715739	Root	20.786
SRR9715742	Root	28.792
SRR9715743	Root	26.176

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.395
SRR8749028	MeJA induced 9h	21.510
SRR8749029	MeJA induced 9h	36.354
SRR8749030	Uninduced	42.828
SRR8749031	Uninduced	35.975
SRR8749032	Uninduced	44.337

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.419
SRR8400027	Control - Root	40.237