Gene detail information of Glyur000740s00028694 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G09990.1 | 8.00E-69 | Ribosomal protein S5 domain 2-like superfamily protein |
| NR | XP_003518703.1 | 1.84E-93 | PREDICTED: 40S ribosomal protein S16-like [Glycine max] |
| COG | YP_004004449.1 | 4.00E-35 | 30S ribosomal protein S9 [Methanothermus fervidus DSM 2088] |
| Swissprot | tr|P46293|RS16_GOSHI | 2.00E-90 | 40S ribosomal protein S16 |
| trEMBL | tr|I1JE09|I1JE09_SOYBN | 7.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G11540.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00740 | 52694 | 53116 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000740s00028694.1 | PF00380.14 | Ribosomal_S9 | 8 | 140 | 4.20E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 115.852 |
| SRR1783600 | control | 114.243 |
| SRR1783602 | moderate drought stress | 92.165 |
| SRR1811619 | moderate drought stress | 89.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 359.735 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 354.008 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 132.628 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 126.683 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 245.348 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 242.951 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 96.312 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 95.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 666.524 |
| SRR2868004 | Drought Stress (root) | 396.667 |
| SRR2967015 | Control (root) | 357.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 354.589 |
| SRR9715740 | Leaf | 238.670 |
| SRR9715741 | Leaf | 270.748 |
| SRR9715739 | Root | 679.433 |
| SRR9715742 | Root | 509.955 |
| SRR9715743 | Root | 563.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 681.557 |
| SRR8749028 | MeJA induced 9h | 153.305 |
| SRR8749029 | MeJA induced 9h | 292.187 |
| SRR8749030 | Uninduced | 27.703 |
| SRR8749031 | Uninduced | 14.589 |
| SRR8749032 | Uninduced | 65.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 544.967 |
| SRR8400027 | Control - Root | 485.011 |