Gene detail

Gene detail information of Glyur000740s00028693.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34050.1	3.00E-132	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_004505242.1	3.16E-179	PREDICTED: caffeoyl-CoA O-methyltransferase-like [Cicer arietinum]
COG	YP_007108508.1	5.00E-59	O-methyltransferase family protein [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q40313\|CAMT_MEDSA	5.00E-179	Caffeoyl-CoA O-methyltransferase
trEMBL	tr\|V9I5Z4\|V9I5Z4_9FABA	1.00E-178	Cinnamoyl-CoA O-methyltransferase {ECO:0000313\|EMBL:AEV93479.1}

Sequence

Transcript Sequence

>Glyur000740s00028693.1
CCCACCAGCAACAAATAAAACAGGGCCAGTGGGCTCGATTAGCAACTCCCAAGTGAAGCCTGGCCCATGCTCATTTCTCAAGCAAACGATGTACTTCTTCACNAACCACGGACCGGACGCCAACCGGTTCAACCAACCATCACAACTTTTTCTTTTCAATCTTACCGGTTCAGACCGGCCTTTCTGTCCCTTATAAAACCATNCTCCTCCTATATCCCCTTCAGCAGTATAGACTCCAGTTAACAACTCTTCAACGCAGAGCAGAAGCTGAAAAGAGGGAGAAGAAAAGAAAACATAGCAATGGCAACCAACGAGGATCAAAAGCAAACTGAAGCTGGAAGGCACCAAGAGGTTGGTCACAAGAGTCTTCTGCAAAGTGATGCTCTTTACCAGTATATTCTGGAGACTAGTGTCTACCCAAGAGAACATGAAGCCATGAAAGAGTTGAGAGAGTTGACAGCAAAGCACCCATGGAACATCATGACTACCTCTGCAGACGAAGGGCAATTTTTGAACATGCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGCTACTCCCTTCTTGCTACTGCCCTCGCTCTTCCTGAGGATGGAAAGATTTTGGCCATGGACGTTAATAGGGAGAATTACGAACTGGGTCTGCCTGTAATAAAAAAAGCTGGTGTTGCCCACAAAATTGATTTCAGGGAAGGCCCTGCTCTTCCGGTTCTTGATGAAATGGTTAAAGACGAAAAGAATCATGGGAGCTTCGATTTCATCTTCGTGGATGCAGACAAGGACAATTACCTCAACTACCACAAGAGGCTCATCGAGCTTGTTAAAGTGGGAGGTGTGATCGGGTACGACAACACCNTGTGGAACGGGTCTGTGGTGGCACCCCCTGATGCACCTCTCAGGAAGTATGTTAGGTATTACAGGGATTTCGTGTTGGAGCTCAACAAGGCTTTGGCTGTGGACCCCAGGATTGAAATCTGCATGCTTCCGGTTGGTGATGGAATCACTATCTGCCGTCGGATCAAGTGATTGATTGCCTTTGGTGTGNACAACAATCATGGACCACCACCCTTGCTTCACCCACTCCCCATGATTCATCATCATTTTGTGGGAGCCAAAGCATTTAAAAGTCATCGAGGCTCTTTTCTTTTTCTTTTCAACAAAATATATTTGTGCTTGTAATGTTCTCTTGAGTCTTGTCATTGATATGCAAACTGCGAATAATTAAAAATTATATATACTTGGGCCCTTTTTNTCCCCTCGTTTGGTTTATTTCCACAAGCATGGTTTATTTTGAAGCCAATTACCCTTGGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00740	48710	50672	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00588	E2.1.1.104	EC:2.1.1.104	Phenylalanine metabolism	map00360
			Phenylpropanoid biosynthesis	map00940
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
			Flavonoid biosynthesis	map00941

Gene Ontology

molecular_function
GO:0008171 O-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000740s00028693.1	PF01596.12	Methyltransf_3	35	246	7.70E-90

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	119.977
SRR1783600	control	120.305
SRR1783602	moderate drought stress	85.062
SRR1811619	moderate drought stress	84.371

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	101.417
DRR006520	Root Summer glycyrrhizin high producing strain	100.528
DRR006521	Root Winter glycyrrhizin high producing strain	39.131
DRR006522	Root Winter glycyrrhizin high producing strain	38.066
DRR006523	Root Summer glycyrrhizin low producing strain	128.432
DRR006524	Root Summer glycyrrhizin low producing strain	129.112
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.844
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.936

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	748.602
SRR2868004	Drought Stress (root)	607.454
SRR2967015	Control (root)	496.467

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	433.583
SRR9715740	Leaf	348.827
SRR9715741	Leaf	526.346
SRR9715739	Root	75.844
SRR9715742	Root	169.993
SRR9715743	Root	147.750

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	609.440
SRR8749028	MeJA induced 9h	791.481
SRR8749029	MeJA induced 9h	530.209
SRR8749030	Uninduced	961.508
SRR8749031	Uninduced	380.474
SRR8749032	Uninduced	651.394

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	478.210
SRR8400027	Control - Root	287.745