Gene detail information of Glyur000737s00020123 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63380.1 | 3.00E-140 | AMP-dependent synthetase and ligase family protein |
| NR | XP_004500662.1 | 0 | PREDICTED: 4-coumarate--CoA ligase-like 9-like isoform X1 [Cicer arietinum] |
| COG | YP_004963122.1 | 4.00E-72 | 4-coumarate:CoA ligase [Streptomyces bingchenggensis BCW-1] |
| Swissprot | tr|Q84P23|4CLL9_ARATH | 2.00E-180 | 4-coumarate--CoA ligase-like 9 |
| trEMBL | tr|V7AWH8|V7AWH8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW09929.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00737 | 116967 | 122898 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000737s00020123.1 | PF00501.23 | AMP-binding | 66 | 337 | 3.30E-39 |
| Glyur000737s00020123.1 | PF00501.23 | AMP-binding | 343 | 390 | 1.20E-11 |
| Glyur000737s00020123.1 | PF13193.1 | AMP-binding_C | 399 | 474 | 1.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.985 |
| SRR1783600 | control | 2.797 |
| SRR1783602 | moderate drought stress | 17.918 |
| SRR1811619 | moderate drought stress | 17.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.107 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.360 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.564 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.261 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.348 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.865 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.524 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 35.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.582 |
| SRR2868004 | Drought Stress (root) | 0.655 |
| SRR2967015 | Control (root) | 2.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.283 |
| SRR9715740 | Leaf | 3.884 |
| SRR9715741 | Leaf | 4.841 |
| SRR9715739 | Root | 0.519 |
| SRR9715742 | Root | 1.101 |
| SRR9715743 | Root | 1.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.263 |
| SRR8749028 | MeJA induced 9h | 2.519 |
| SRR8749029 | MeJA induced 9h | 1.496 |
| SRR8749030 | Uninduced | 3.928 |
| SRR8749031 | Uninduced | 0.849 |
| SRR8749032 | Uninduced | 2.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.103 |
| SRR8400027 | Control - Root | 2.862 |