Gene detail

Gene detail information of Glyur000737s00020111

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48480.1	4.00E-57	Cysteine proteinases superfamily protein
NR	XP_004501822.1	6.57E-139	PREDICTED: probable ubiquitin-like-specific protease 2A-like [Cicer arietinum]
Swissprot	tr\|Q0WKV8\|ULP2A_ARATH	3.00E-15	Probable ubiquitin-like-specific protease 2A
trEMBL	tr\|I3SBV8\|I3SBV8_LOTJA	2.00E-136	Uncharacterized protein {ECO:0000313\|EMBL:AFK37750.1}

Sequence

Transcript Sequence

>Glyur000737s00020111.1
AATTATTTCTCAAATCACTCATACTTTCTATTTTTTCCAATATTAGACCANCAACCACGATTCAAGTGTTCGTAGTACACAATTCGCTTACCTTTGAAAAATCACTCCCTTTCATCTTCTCAAACGCCATTGTTGTGATAAACCCTCGTATCAGGGGCAAAAAGGAGCACAATTCACCCCACTGAGAAACACACACTGTCGTATTTTACCATTACTAATACTAATATCAATAAATGAAACTGCGCTCAGCATCGAGGAAAACCAACAAGGTTGGTGACACTGAAGGATATGAATGTAAACAATTTCTGGGGTTCCCCTGCTTCCTTTGCATTTTCTCCCATTTCAAGATTGTGGATTCTGAGAAGAAGCAAGAAAGAGAAATTGACTCAGGAAATGGAACCAAGCTTGTTGATGCTGCTAGTCAAGGAAACAAAACAAAGCCTGTAAGAGATTTGATAGGAAGTGTTGTTTCGACTCTTCCTCCGTTTAATCTGAGCAATATTCCCCGGCGACCGCGGTCAAAGAGGAAGAGAAAATTCAAGGGCAAGGAAGCTCTCTCTAGACCCAAGGAAAAGCTAAACAGTGGAGTCTTTGATGATTACTTAAAGAAAATATGGAAGAGTTTCTCAGATGATAAGAAGAGGCCCTTTGCATACATTGACAGCTTATGGTTTAGCCTTTACAGGAAAGCTTCATCTAAAGATAAGGTGCTGAGTTGGATTAAGAAAGAACATATTTTCACAAAGGCATATGTTTTTGTTCCTATAGTCTGCTGGGGTCACTGGAGCCTTTTGATCTTCTGCAATTTTGGTGAGAACTNGCAATCAGTTACCAGATCGCGGTGTATGTTGTTGCTCGATTCTCTTGAAATGGCCAATCCAAGGCGGCTTGAACCTGAGATAAGAAGATTTGTACTAGACATTCATAGAGCAGGGGACAGGCCAGAGACTAAGGATCTTATATCTCGGATTCCATTACAAGTACCCAAGGTGCCACAACAAAGAGATGGCAATGAATGTGGAAACTTTGTGCTCTATTTCATTAAATTGTTTTTGGAATTCGCGCCTGAGATTTTTAGCATGGAGGGGTACCCATACTTTATGACAAAAGATTGGTTTACCTTCCAAGACTTGGATAGGTTTTGTGAGAGACTTTATTCATTGGATTAGATATCCCCAAATCTGAGTAGACTAGGACTNACATTCTTCATTGCCGATCAATTCCTATTACATACATGGGAAGGGGCGATTTGTTCATATAGGAGGCAGACATATACGGTTGTTTTTGTGCTGCTGGAGTTGATGTTTGCATTACCAGTTGGCTTCTATTGAAGTAGTTGTTAATGTTACATCGTGTTCAGATTGATAGGAGCAGTATTTGGCATAAATTCAAGAATATAACAGATTGTAATAATGTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00737	21521	23731	-

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0008234 cysteine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000737s00020111.1	PF02902.14	Peptidase_C48	115	294	7.80E-13
Glyur000737s00020111.2	PF02902.14	Peptidase_C48	93	272	6.40E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.282
SRR1783600	control	2.157
SRR1783602	moderate drought stress	2.246
SRR1811619	moderate drought stress	2.288

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.090
DRR006520	Root Summer glycyrrhizin high producing strain	4.142
DRR006521	Root Winter glycyrrhizin high producing strain	1.175
DRR006522	Root Winter glycyrrhizin high producing strain	1.227
DRR006523	Root Summer glycyrrhizin low producing strain	3.153
DRR006524	Root Summer glycyrrhizin low producing strain	3.011
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.167
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.178

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.344
SRR2868004	Drought Stress (root)	6.459
SRR2967015	Control (root)	4.657

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.267
SRR9715740	Leaf	2.202
SRR9715741	Leaf	2.711
SRR9715739	Root	0.546
SRR9715742	Root	1.265
SRR9715743	Root	0.636

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.436
SRR8749028	MeJA induced 9h	2.900
SRR8749029	MeJA induced 9h	1.448
SRR8749030	Uninduced	2.755
SRR8749031	Uninduced	1.221
SRR8749032	Uninduced	0.863

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.684
SRR8400027	Control - Root	7.841