Gene detail

Gene detail information of Glyur000735s00021580.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52200.1	0	Dihydrolipoamide acetyltransferase, long form protein
NR	XP_003556288.1	0	PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [Glycine max]
COG	YP_003715853.1	1.00E-93	Dihydrolipoamide acetyltransferase component (E2) of pyruvatedehydrogenase complex [Croceibacter atlanticus HTCC2559]
Swissprot	tr\|Q0WQF7\|ODP21_ARATH	0	Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial (Precursor)
trEMBL	tr\|I1NHP9\|I1NHP9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G33080.1}

Sequence

Transcript Sequence

>Glyur000735s00021580.2
AAAAAAAATAAAATTATGCGAAACGAAACAAACCAACAAGTCACGAAAGTAACGAGTGTGTTTGTTAACCCTCTCCTGACTCCTCTCTCTCATTTTTCCTAACAATCGAATCAAATCGACGCTACCGCATTTGGGATTCTTCTCTGCGATGGTACTCTCGCGCCTTCGTCACCCTCTCATCTCTCGTTCCCTTCGCCTCCTCTTTTCCTCCACCAGATCCATTTCTCGAACTTCTAATTCATGGAATCTTTCTGTCAGCAGTGATCGGAATCAACGGCCTGCATCTTGGTCTAGGCTTACTGGAGTTTNTGATAGATCTTTGAAGTCAAAGTGGATTGATGTCAAATACTTCTCATCTTCAGATTCTTCACATGAGGTCCTTGGGATGCCAGCTTTATCTCCTACAATGACCCAAGGTAATATTGCAAAATGGAGGAAGAAAGAAGGAGATAAGATAGAAGCGGGTGATATACTATGTGAAATTGAAACAGACAAAGCTACACTTGAATTTGAAAGTCTTGAAGAAGGATTTCTTGCTAAGATATTGGTACCTGAAGGTTCAAAGGATGTTCCTGTTGGACAACCGATTGCAATAACAGTTGAAGATGAAAGTGACATTCAAAATATTCCTGCTACCTTGGGGGGTGAGACCATGGTTGAAGAGAAGAANCCGACACATCAGGATGTCACAGATGAGGAGAGGAAACCAGAATCAACTTCTACGATTAATGCATCAGAACTTCCACCTCATGTCCTTCTTGAAATGCCAGCTTTGTCCCCAACAATGAACCAAGGAAACATTGCTAAATGGAGGAAAAAAGAAGGAGACAAGATTGAAGTGGGTGACATATTATGCGAGATTGAGACAGACAAAGCTACTCTTGAATTTGAAACTCTTGAAGAGGGGTACCTAGCTAAGATACTTGCACCAGAAGGTTCAAAAGATGTGGCAGTTGGACAGCCTATTGCAATAACAGTTGAAGATGCGAGTGATATTGAAGCTGTAAAGAATTCCATTAGCNGCAGCTCAGCAAGCCAAAAGGAGAAGGCCACCCAACATGACACTAAAAGTGAGGCCAAAGCTCAGAAAAACAATATAANACGAATCAGTCCAGCTGCAAAGTTGCTAATTATGGAATATGGATTGGATTCATCGACATTGAATGCAACTGGTCCTAATGGTACCCTACTGAAAGGGGATGTTCTTTCTGCAATTAAATCAGGAAAGTTGTCGTCAAAACCTGCTTCATCTAAAGAAAAGGCATCATCATCTCAAAGTCACCAAGTTGCAGCTTCACAAGAGTCAAAGTCTGACTTAAAGCAGTCAGATGCTTATGAAGATTTTCCTAATAGTCAAATTCGCAAGATGTTATGCGTGCTCTTGGTCCCGGTACATTCGCAACCCAATACATTCTTTATTTGCTCCTTGATTGCAGAGCAGTATGACGTTAAAGTTTCAGTGAATGACATTATTATCAAAGTTGTAGCAGCTTCTCTCAGAAATGTACCAGAAGCAAACGCATACTGGAATGCTGAGAAGGGTGAGGTCATCNTATGTGATTCTGTTGACATATCAATCGCAGTTGCCACCGAGAAGGTAATTGATGGTTGTTTAACTGCCATTGTTGTTTACAAAGCACTCAAACCTTTTGTGTGGCTGCAGGGCTTGATGACCCCAATAATAAAAAATGCTGATCACAAGACAATATCTGCCATCTCCTCAGAGGTCAAGGAACTAGCTGCAAAGGCACGCGCTGGCAAGTTGACNCCACATGAATTCCAAGGGGGAACTTTTAGCATTTCAAACTTGGGAATGTTTCCTGTGGATGAATTTTGTGCCATTATAAACCCCCCACAGGCTTGCATTCTTGCGGTAGGGAGAGGCAACAAAGTTGTGGAACCAGTAATTGGAGCTGATGGAATTGAGAAGCCATCAGTTGCCACTAAGTTGAAGTTAACATTGTCTGCTGATCATCGTGTCTTTGATGGAAAAGTTGGAGTTCATCCCCATCATTCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00735	110042	119060	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00627	DLAT, aceF, pdhC	EC:2.3.1.12	Carbon metabolism	map01200
			Carbon metabolism	map01200
			Glycolysis / Gluconeogenesis	map00010
			Glycolysis / Gluconeogenesis	map00010
			Citrate cycle (TCA cycle)	map00020
			Citrate cycle (TCA cycle)	map00020
			Pyruvate metabolism	map00620
			Pyruvate metabolism	map00620

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000735s00021580.2	PF00364.17	Biotin_lipoyl	78	149	1.50E-20
Glyur000735s00021580.2	PF00364.17	Biotin_lipoyl	204	275	3.90E-19
Glyur000735s00021580.2	PF02817.12	E3_binding	320	353	4.10E-07
Glyur000735s00021580.2	PF00198.18	2-oxoacid_dh	431	617	8.20E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.227
SRR1783600	control	39.326
SRR1783602	moderate drought stress	25.117
SRR1811619	moderate drought stress	25.115

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.688
DRR006520	Root Summer glycyrrhizin high producing strain	26.499
DRR006521	Root Winter glycyrrhizin high producing strain	27.579
DRR006522	Root Winter glycyrrhizin high producing strain	27.466
DRR006523	Root Summer glycyrrhizin low producing strain	25.443
DRR006524	Root Summer glycyrrhizin low producing strain	24.912
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.251
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.233

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.824
SRR2868004	Drought Stress (root)	54.922
SRR2967015	Control (root)	47.740

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.735
SRR9715740	Leaf	20.841
SRR9715741	Leaf	28.369
SRR9715739	Root	4.282
SRR9715742	Root	22.114
SRR9715743	Root	18.559

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.252
SRR8749028	MeJA induced 9h	45.282
SRR8749029	MeJA induced 9h	35.964
SRR8749030	Uninduced	55.458
SRR8749031	Uninduced	61.266
SRR8749032	Uninduced	32.831

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.600
SRR8400027	Control - Root	50.845