Gene detail

Gene detail information of Glyur000735s00021574

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08230.2	2.00E-133	Transmembrane amino acid transporter family protein
NR	XP_007143833.1	0	hypothetical protein PHAVU_007G105500g [Phaseolus vulgaris]
Swissprot	tr\|F4HW02\|GAT1_ARATH	2.00E-170	GABA transporter 1
trEMBL	tr\|V7BDA8\|V7BDA8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15827.1}

Sequence

Transcript Sequence

>Glyur000735s00021574.1
ATTATTATTATTATTATTAGCTCAAGGTACATATATATGAATTTAGAATATTATTAGCTGCAGAGAAACAANACCACAATTTAAGTAATAACAACAACACAGAGAGAAAATTTTGTAGCAGCAGCAAAGATGGGAGTTGTTACTCGCAGCACTTCAGACGTGTCTACAACAAGTGACAGTGAAAAGGGCTTTGGGATCGACCCTTCTACTTCGCCAGAGCTAGATGCAGGAGCAAAGTTTGTTCTCGTATCTCGAGGATCATGGTTGCACTGCGGGTACCATTTGACGACATCAATTGTGGGACCAGTGCTTCTGACTCTTCCTTTCTCCTTCACTCTTCTGGGTTGGGTTGGAGGAGTGCTTTGGTTGACCCTTGCAGGTGTCACCACATTCTATTCATANAACCTTTTATCTATGGTCTTAGATCATCATGCTCAGCTTGGTCGCCGCCAGCTTCGATTCAGGGATATGGCTAGAGATATCTTAGGACCTGGATGGACCAGATACTATGTAGGCCCACTTCAGTTTATCATATGCTTTGGCACAGTGATTGGTGGTCCTCTAGTGGGAGGAAAGAGCCTCAAGTCCATTTACCAGCTCTACCATCCAGATGGACCATTGAAGCTNTACCATTTCATCATTATATGTGGAGTCATAACACTGATTTTGGCTCAGCTTCCATCCTTTCACTCCCTGAGGCACATTAATCTGATTTCTGTGATTCTTTGTTTNGCTTATGCTACATGTATCGCGGTCGGTTCAATACACATTGGTCACTCCAAAGATGCGCCGCCTCAACATTATTCCGTGAGAGGTTCTGATGCAGATAAACTCTTTGGTGTCTTCAATGGTATTTCAATCATTGCNACTGCATATGCAAGTGGGATCATTCCAGAGATACAGGCAACTGTGGCATCTCCTGTGAAGGGAAAAATGTTGAAAGGACTATGTGTGTGTTATTCTGTTATAGTGGCTACCTATTTCAGTGTTGCCATCTCTGGTTATTGGGCATTTGGCAATTTAGCCGGTGCATCAGTTCTTGGTAACTTCATTGGGNAGACAAAGCCATTGCTGCCCAAATGGTTTATCTTGATGATCCATATATTCATCCTTCTGCAAGTGATGGCAATGACCGCGGTTTATCTGCAACCAACAAATGAATTGTTTGAATCAATTTTTGGAGACCCAAAAAAGGGACAGTTTTCCATGCGCAATGTTGTGCCAAGGGTGCTCTTTCGGTCAATATCAGTGGCTGCAGCCACAGTNTTAGCAGCCATGTTGCCATTTTTTCCTGATATAATGGCATTGTTTGGGGCACTTGCATTCATTCCTCTTGATTTCATTTTGCCAATGGTTTTTTACAATTTGACTTTTAAGCCCTCAAAACAAAGCATAATCTTTTGGGTGAACACATTGATTGGAGGAGCATCCTCAATTTTAGTTGTAGTAGGGGGAATAGCATCAATTAGACAAATAGTTCTTGATGCCAAAGCATATAGTTTGTTTGCTGATTATTGATTTGTAAAAATTATTATATATAGCAATACAACGAGAAGCAATTCACACAGACATCAATCAGTGCTAAGTTTCATGGCTGGGGCTATTCTATTAGTCATCTCAAATCAAGCAATTGTTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00735	66661	69850	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000735s00021574.1	PF01490.13	Aa_trans	42	441	1.60E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.817
SRR1783600	control	3.720
SRR1783602	moderate drought stress	4.586
SRR1811619	moderate drought stress	4.562

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.419
DRR006520	Root Summer glycyrrhizin high producing strain	2.567
DRR006521	Root Winter glycyrrhizin high producing strain	1.831
DRR006522	Root Winter glycyrrhizin high producing strain	1.788
DRR006523	Root Summer glycyrrhizin low producing strain	6.845
DRR006524	Root Summer glycyrrhizin low producing strain	7.302
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.677
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.671

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.099
SRR2868004	Drought Stress (root)	68.810
SRR2967015	Control (root)	34.091

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	68.497
SRR9715740	Leaf	36.750
SRR9715741	Leaf	144.897
SRR9715739	Root	8.528
SRR9715742	Root	54.676
SRR9715743	Root	45.750

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.095
SRR8749028	MeJA induced 9h	5.526
SRR8749029	MeJA induced 9h	4.006
SRR8749030	Uninduced	46.032
SRR8749031	Uninduced	11.178
SRR8749032	Uninduced	14.253

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.968
SRR8400027	Control - Root	20.586