Gene detail information of Glyur000735s00021568 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04560.2 | 3.00E-129 | HhH-GPD base excision DNA repair family protein |
| NR | XP_004496178.1 | 0 | PREDICTED: transcriptional activator DEMETER-like [Cicer arietinum] |
| COG | YP_003322501.1 | 7.00E-13 | HhH-GPD family protein [Thermobaculum terrenum ATCC BAA-798] |
| Swissprot | tr|Q8LK56|DME_ARATH | 3.00E-135 | Transcriptional activator DEMETER |
| trEMBL | tr|K7N4D5|K7N4D5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G32960.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00735 | 13984 | 22397 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000735s00021568.1 | PF00730.20 | HhH-GPD | 1074 | 1196 | 1.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.494 |
| SRR1783600 | control | 5.397 |
| SRR1783602 | moderate drought stress | 4.984 |
| SRR1811619 | moderate drought stress | 5.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.032 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.831 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.139 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.959 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.596 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.402 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.312 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.782 |
| SRR2868004 | Drought Stress (root) | 15.717 |
| SRR2967015 | Control (root) | 17.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.812 |
| SRR9715740 | Leaf | 5.824 |
| SRR9715741 | Leaf | 7.360 |
| SRR9715739 | Root | 0.844 |
| SRR9715742 | Root | 3.972 |
| SRR9715743 | Root | 3.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.118 |
| SRR8749028 | MeJA induced 9h | 7.550 |
| SRR8749029 | MeJA induced 9h | 2.542 |
| SRR8749030 | Uninduced | 3.888 |
| SRR8749031 | Uninduced | 4.577 |
| SRR8749032 | Uninduced | 2.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.262 |
| SRR8400027 | Control - Root | 12.324 |