Gene detail information of Glyur000734s00026336.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G03510.22.00E-35RING membrane-anchor 1
NRKEH19655.16.53E-90E3 ubiquitin-protein ligase RMA1H1-like protein [Medicago truncatula]
Swissprottr|Q6R567|RMA1_CAPAN1.00E-51E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|A0A072U1G6|A0A072U1G6_MEDTR2.00E-90E3 ubiquitin-protein ligase RMA1H1-like protein {ECO:0000313|EMBL:KEH19655.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00734118380119251+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K10666RNF5EC:2.3.2.27Protein processing in endoplasmic reticulummap04141


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000734s00026336.1PF13923.1zf-C3HC4_235836.10E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.198
SRR1783600control11.612
SRR1783602moderate drought stress47.977
SRR1811619moderate drought stress46.819

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.189
DRR006520Root Summer glycyrrhizin high producing strain24.233
DRR006521Root Winter glycyrrhizin high producing strain13.663
DRR006522Root Winter glycyrrhizin high producing strain12.282
DRR006523Root Summer glycyrrhizin low producing strain27.218
DRR006524Root Summer glycyrrhizin low producing strain26.943
DRR006525Leaf Summer glycyrrhizin high producing strain41.644
DRR006526Leaf Summer glycyrrhizin high producing strain42.612

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)15.175
SRR2868004Drought Stress (root)44.148
SRR2967015Control (root)81.487

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf28.285
SRR9715740Leaf43.364
SRR9715741Leaf48.256
SRR9715739Root4.839
SRR9715742Root10.722
SRR9715743Root9.349

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.113
SRR8749028MeJA induced 9h19.426
SRR8749029MeJA induced 9h13.403
SRR8749030Uninduced8.040
SRR8749031Uninduced28.957
SRR8749032Uninduced18.764

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root10.530
SRR8400027Control - Root8.858

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved