Gene detail information of Glyur000734s00026329.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20690.1 | 9.00E-88 | lumazine-binding family protein |
| NR | XP_004506614.1 | 2.08E-134 | PREDICTED: riboflavin synthase-like [Cicer arietinum] |
| COG | YP_002463945.1 | 3.00E-73 | riboflavin synthase subunit alpha [Chloroflexus aggregans DSM 9485] |
| trEMBL | tr|V7AHF1|V7AHF1_PHAVU | 4.00E-134 | Uncharacterized protein {ECO:0000313|EMBL:ESW04655.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00734 | 81762 | 82598 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00793 | ribE, RIB5 | EC:2.5.1.9 | Riboflavin metabolism | map00740 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000734s00026329.1 | PF00677.12 | Lum_binding | 72 | 158 | 3.20E-16 |
| Glyur000734s00026329.1 | PF00677.12 | Lum_binding | 171 | 257 | 2.10E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.858 |
| SRR1783600 | control | 47.966 |
| SRR1783602 | moderate drought stress | 49.037 |
| SRR1811619 | moderate drought stress | 48.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 50.205 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.513 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.426 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.808 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 65.144 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 66.097 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 84.911 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 85.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 104.995 |
| SRR2868004 | Drought Stress (root) | 75.791 |
| SRR2967015 | Control (root) | 71.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 98.632 |
| SRR9715740 | Leaf | 59.489 |
| SRR9715741 | Leaf | 73.274 |
| SRR9715739 | Root | 127.397 |
| SRR9715742 | Root | 84.182 |
| SRR9715743 | Root | 85.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 70.472 |
| SRR8749028 | MeJA induced 9h | 40.674 |
| SRR8749029 | MeJA induced 9h | 67.981 |
| SRR8749030 | Uninduced | 41.646 |
| SRR8749031 | Uninduced | 25.406 |
| SRR8749032 | Uninduced | 29.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 69.348 |
| SRR8400027 | Control - Root | 63.147 |