Gene detail information of Glyur000734s00026326 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03700.1 | 7.00E-50 | Uncharacterised protein family (UPF0497) |
| NR | KEH17619.1 | 3.79E-98 | CASP POPTRDRAFT-like protein [Medicago truncatula] |
| Swissprot | tr|B9RW00|CSPL6_RICCO | 3.00E-80 | CASP-like protein 1C1 |
| trEMBL | tr|A0A072TJ77|A0A072TJ77_MEDTR | 1.00E-98 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00734 | 79294 | 80140 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000734s00026326.1 | PF04535.7 | DUF588 | 4 | 141 | 2.60E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 66.777 |
| SRR1783600 | control | 66.843 |
| SRR1783602 | moderate drought stress | 45.051 |
| SRR1811619 | moderate drought stress | 44.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.439 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.384 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.212 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.082 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 82.446 |
| SRR2868004 | Drought Stress (root) | 54.817 |
| SRR2967015 | Control (root) | 74.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.126 |
| SRR9715740 | Leaf | 0.395 |
| SRR9715741 | Leaf | 0.451 |
| SRR9715739 | Root | 111.968 |
| SRR9715742 | Root | 72.271 |
| SRR9715743 | Root | 72.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.089 |
| SRR8749029 | MeJA induced 9h | 0.646 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.084 |
| SRR8749032 | Uninduced | 0.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 192.140 |
| SRR8400027 | Control - Root | 150.260 |