Gene detail

Gene detail information of Glyur000734s00026317

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G03550.1	glucan synthase-like 5
NR	XP_004505578.1	PREDICTED: callose synthase 12-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9ZT82\|CALSC_ARATH	Callose synthase 12
trEMBL	tr\|G7JSU8\|G7JSU8_MEDTR	Callose synthase-like protein {ECO:0000313\|EMBL:AES89655.1}

Sequence

Transcript Sequence

>Glyur000734s00026317.1
ATGAGTCTTCGCCACCGCCATCCACCGCCGGGGTCCGCCACTCCTCCACGGGAGGACGAGCCCTACAACATCATCCCCGTCCACAACCTCCTCGCCGACCACCCATCCCTCCGGTTCCCCGAGGTCCGCGCCGCCGCCGCAGCACTCCGCTCCGTCGGCGACCTGCGGCCTCCTCCGTTCGGGCAATGGCGGCCACACATGGACCTCCTGGACTGGCTTGCCCTCTTCTTCGGGTTCCAGAAGGACAACGTCCGCAACCAGCGCGAGCACCTTGTCCTCCACCTCGCCAACGCTCAGATGCGCCTNACTCCGCCGCCGGACAACATCGACACCCTCGACGCCGGCGTCCTCCGTCGATTCCGCAGGAAGCTACTCAAGAACTACACCTCCTGGTGCTCCTACCTCGGCAAGAAGTCCAACATCTGGATCTCCGACCACCGCCGCGCCGGCGACTCGGAAGTCCGGCGAGAGCTCCTCTACGTGTCCCTCTACCTCCTCATCTGGGGCGAGGCCGCGAATCTGCGCTTCGCCCCGGAGTGCATCTGCTACATCTTCCACAACATGGCAAACGAGCTGAACAGAATCCTTGAGGATTACATCGACGAAAACACGGGGCAGCCCGTGATGCCTTCGATTTCCGGTGAGAACGCGTTTCTGAACTTTGTGGTGAAGCCTATTTACGAGACGATTAAGCGTGAGGTGGAGAGTAGTAGGAATGGAACTGCTCCTCATAGTGCTTGGAGAAATTATGATGATATCAATGAGTACTTTTGGAGTAGGAGATGTTTTGAGAAGCTCAAGTGGCCTCCCGATGTTGGGAGCAACTTTTTTGTGACGGCTGGTAGGGGGAAGCATGTGGGCAAGACTGGGTTTGTGGAGCAGAGGTCCTTTTGGAATCTGTTTAGGAGCTTTGACAGGCTCTGGGTGATGTTGGTGTTGTTTCTTCAGGCTGCTATAATTGTTGCTTGGGAGGGGAAGACTTATCCCTGGCAGGCTCTCGAGGACCGCACTGTGCAGGTCAGGGTTTTGACCATTTTCTTCACATGGAGTGGTATGAGGTTTGTGCAGTCTCTGCTTGATGTGGGGATGCAGTACAGGTTGGTGTCAAGGGAGACAATGCGGCTAGGAGTAAGGATGGTGCTGAAATGTTTGGTTGCAGCTGGGTGGATTGTTGTCTTTGGTGTGTTTTATGGGAGGATATGGACGCAGAGAAACCATGATAGGCGGTGGTCACCGGCGGCCAACAGGCGGGTGGTGAACTTTCTCGAGGCTGTCTTTGTCTTCATCATTCCGGAGCTTCTGGCTTTAGCCCTTTTTATACTTCCTTGGATTAGAAATTTTGTTGAGAATACAAACTGGAGGATCTTTTACATGTTGTCCTGGTGGTTTCAGAGTAGAACCTTTGTTGGTCGTGGTTTGAGAGAAGGGCTTGTAGACAACATTAAGTATTCATTGTTCTGGGTTTCGGTACTGGCCACAAAATTCTGTTTCAGTTACTTTTTGCAGATTAAACCCATGATTGCTCCAACAAAGGCAGTGCTGGACCTCAAGAATGTTGAGTATGAATGGCATGAGTTTTTTCATAACAGCAACCGCTTTGCTGTTGGGTTACTGTGGCTTCCAGTTGTTCTGATTTATCTAATGGATATACAGATTTGGTATTCCATATATTCATCTTTTGCTGGGGCAGCTGTTGGGTTGTTTGCACACTTGGGCGAGATCCGAAACATGCAGCAGCTGAAACTGAGGTTCCAGTTTTTTGCTAGTGCAATTCAGTTTAATCTCATGCCAGAGGAGCAACTGTTGAATGCAAGAGGAACGTTGAAGAGCAAATTTAAGGATGCCATCCACAGGTTGAAGCTCAGATATGGGCTTGGTCGGCCCTATAGGAAGCTTGAGTCAAACCAGGTTGAGGCCAACAAGTTTGCTTTGATATGGAACGAGATAATTTTGGCTTTCAGGGAGGAGGATATTATCTCTGACAAAGAGGTTGAGCTGCTGGAGCTGCCACAGAACTCTTGGAATGTCCGGGTTATCCGCTGGCCATGTTTTCTTCTCTGCAATGAATTACTGCTGGCACTCAGCCAGGCCAAAGAACTAGTTGATGATACTGATAAGAGGCTTTATGGAAAGATATGCAAGAATGAGTACAGANGCTGTGCTGTCATTGAAGCGTATGATAGTGTCAAGCACTTGCTTCATGAGATTATCAAACCCAATAGTGAAGAGCATTCTATTGTGACTGTTCTGTTTCAGGAAATTGATCACTCTCTTGAGATTGAGAAATTCACTAAAACATTCAGAACAACTGCGCTGCCTCAGCTTCACAGCAAGTTGATAAAACTTGTTGAGTTATTGAACAAGCCCGTCAAAGATCCTAACCAAGTGGTGAATACCCTTCAGGCCCTTTATGAGGTCTCTATCAGAGACTTTTTCAAGGAAAAAAGAAATCCTGATCAGCTAAAGGAGGATGGTTTGGCTCAACATAGTCCTGCTTCAGGTCTACTTTTTGAGAATGCCGTTCAGTTGCCTGACACCAGCAATGAGAATTTCTATAGGCAGGTTCGGCGCTTGCACACAATTCTTACCTCTAGGGATTCAATGCAAAACATCCCAAGAAATCTAGAAGCTAGACGGAGGATTGCTTTCTTCAGCAATTCACTTTTTATGAATATGCCCCATGCTCCCCAAGTTGAGAAAATGATGGCTTTCAGTGTTCTAACTCCTTACTATAGTGAAGAAGTATTATACAGCAAAGAACAGCTCAGAACTGAGAATGAAGATGGTGTTTCAATCTTGTACTATTTGCAGACTATTTATGATGATGAGTGGAAGAATTTTATGGAGAGGATGCGTCGGGAGGGAATGATGAAAGAAAGTGCTCTTTGGACTGATAAACTTAGAGATTTGAGGCTCTGGGCTTCCTACAGAGGCCAGACACTATCACGGACAGTTAGAGGGATGATGTACTACTATCGGGCCCTCAAGATGTTGGCCTTTCTGGATTCTGCATCAGAAATGGATATTCGAGAAGGCTCGCGCGAACTTGTTTCTATGAGGCAAGATAATTTAGACAGCTTCAACTCTGAAAAGTCACCTTCTAGGAGTTTAAGTAGAGCAAGCAGTTCAGTAAGTTTGTTATTCAAAGGCCATGAGTATGGGACTGCTTTAATGAAATTCACGTATGTGGTTGCTTGCCAGATATATGGAACTCAGAAGGAAAAAAAGGATCCTCATGCTGATGAAATTTTGTATCTAATGAAAAACAATGAGGCCCTTCGAGTTGCCTATGTTGATGAGAAAACCACTGGAAGGGATGAGAAGGAGTATTTCTCTGTTCTTGTTAAGTATGATCAACAGTTGCAGAAGGAGGTGGAAATTTACAGAGTAAAATTGCCAGGTCCCTTGAAGCTTGGAGAAGGAAAGCCAGAAAATCAAAATCATGCCATCATCTTCACTCGTGGTGATGCAGTTCAGACTATTGATATGAATCAGGACAACTACTTTGAGGAGGCACTGAAAATCCCTAAACCTGGCCTCACCACCCGCATCTTCATCGTCGACAGCCACCGCCCCATTCACCTCGACAACTTCAGCGACCACAACTACAACGACACCGTCATCGTCCTCTTCACCCACAACTACAAGAAACAGGCCGATCTCGCCTACGACTTCAAGTTCCCCCTCACTGCCCTCGCCAATGCCTCCATAAACATCGACTTCGACTTTGAACCCGGCTNCGGCTCCGGCTCCGAATCTGAGTTCGTGAAGAAGAAGGACCTAAAAGGGGAAAAAAAAGAGGGATTCCAAACAAGATCAAGATGA

Protein Sequence

>Glyur000734s00026317.1
MSLRHRHPPPGSATPPREDEPYNIIPVHNLLADHPSLRFPEVRAAAAALRSVGDLRPPPFGQWRPHMDLLDWLALFFGFQKDNVRNQREHLVLHLANAQMRLTPPPDNIDTLDAGVLRRFRRKLLKNYTSWCSYLGKKSNIWISDHRRAGDSEVRRELLYVSLYLLIWGEAANLRFAPECICYIFHNMANELNRILEDYIDENTGQPVMPSISGENAFLNFVVKPIYETIKREVESSRNGTAPHSAWRNYDDINEYFWSRRCFEKLKWPPDVGSNFFVTAGRGKHVGKTGFVEQRSFWNLFRSFDRLWVMLVLFLQAAIIVAWEGKTYPWQALEDRTVQVRVLTIFFTWSGMRFVQSLLDVGMQYRLVSRETMRLGVRMVLKCLVAAGWIVVFGVFYGRIWTQRNHDRRWSPAANRRVVNFLEAVFVFIIPELLALALFILPWIRNFVENTNWRIFYMLSWWFQSRTFVGRGLREGLVDNIKYSLFWVSVLATKFCFSYFLQIKPMIAPTKAVLDLKNVEYEWHEFFHNSNRFAVGLLWLPVVLIYLMDIQIWYSIYSSFAGAAVGLFAHLGEIRNMQQLKLRFQFFASAIQFNLMPEEQLLNARGTLKSKFKDAIHRLKLRYGLGRPYRKLESNQVEANKFALIWNEIILAFREEDIISDKEVELLELPQNSWNVRVIRWPCFLLCNELLLALSQAKELVDDTDKRLYGKICKNEYRXCAVIEAYDSVKHLLHEIIKPNSEEHSIVTVLFQEIDHSLEIEKFTKTFRTTALPQLHSKLIKLVELLNKPVKDPNQVVNTLQALYEVSIRDFFKEKRNPDQLKEDGLAQHSPASGLLFENAVQLPDTSNENFYRQVRRLHTILTSRDSMQNIPRNLEARRRIAFFSNSLFMNMPHAPQVEKMMAFSVLTPYYSEEVLYSKEQLRTENEDGVSILYYLQTIYDDEWKNFMERMRREGMMKESALWTDKLRDLRLWASYRGQTLSRTVRGMMYYYRALKMLAFLDSASEMDIREGSRELVSMRQDNLDSFNSEKSPSRSLSRASSSVSLLFKGHEYGTALMKFTYVVACQIYGTQKEKKDPHADEILYLMKNNEALRVAYVDEKTTGRDEKEYFSVLVKYDQQLQKEVEIYRVKLPGPLKLGEGKPENQNHAIIFTRGDAVQTIDMNQDNYFEEALKIPKPGLTTRIFIVDSHRPIHLDNFSDHNYNDTVIVLFTHNYKKQADLAYDFKFPLTALANASINIDFDFEPGXGSGSESEFVKKKDLKGEKKEGFQTRSR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00734	56738	64651	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006075 (1->3)-beta-D-glucan biosynthetic process

cellular_component

GO:0000148 1,3-beta-D-glucan synthase complex

GO:0016020 membrane

molecular_function
GO:0003843 1,3-beta-D-glucan synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000734s00026317.1	PF14288.1	FKS1_dom1	156	269	2.00E-42
Glyur000734s00026317.1	PF02364.10	Glucan_synthase	871	1175	5.60E-100

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.604
SRR1783600	control	8.547
SRR1783602	moderate drought stress	6.519
SRR1811619	moderate drought stress	6.433

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.480
DRR006520	Root Summer glycyrrhizin high producing strain	7.293
DRR006521	Root Winter glycyrrhizin high producing strain	2.660
DRR006522	Root Winter glycyrrhizin high producing strain	2.714
DRR006523	Root Summer glycyrrhizin low producing strain	7.811
DRR006524	Root Summer glycyrrhizin low producing strain	7.428
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.650
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.782

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.185
SRR2868004	Drought Stress (root)	20.174
SRR2967015	Control (root)	17.713

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.363
SRR9715740	Leaf	3.300
SRR9715741	Leaf	6.189
SRR9715739	Root	6.209
SRR9715742	Root	35.591
SRR9715743	Root	29.607

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.785
SRR8749028	MeJA induced 9h	17.144
SRR8749029	MeJA induced 9h	5.476
SRR8749030	Uninduced	4.410
SRR8749031	Uninduced	5.997
SRR8749032	Uninduced	2.527

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.093
SRR8400027	Control - Root	26.227