Gene detail

Gene detail information of Glyur000733s00026527.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50530.1	0	CDPK-related kinase
NR	AET04065.2	0	calmodulin-domain kinase CDPK protein [Medicago truncatula]
COG	YP_003339135.1	7.00E-15	serine/threonine protein kinase-like protein [Streptosporangium roseum DSM 43021]
Swissprot	tr\|Q9SCS2\|CAMK5_ARATH	0	CDPK-related kinase 5
trEMBL	tr\|G7LGE1\|G7LGE1_MEDTR	0	Calmodulin-domain kinase CDPK protein {ECO:0000313\|EMBL:AET04065.2}

Sequence

Transcript Sequence

>Glyur000733s00026527.1
AGCAAAACAAGCGAAACTCTCGTCGTTTATTTATGATTAACACTTTCTACGGATCTCTCTCTCTTTCTTTCTGTTTTTTGGTTCTTCTTCTTGCCCAAAAACCATTCTTAAAACACACTCCCATGATCAACGAACCTAAACCTTAATTCCCACAAAATCCCACTTTTCAATTCCTCTCGAAAGCCCCACGATCCAAATCTGCTTCATCCATAGCCACAACACAATAAGGTTTGACTTTGAGCCAGAAGAACCAGAACCAAATAACCACACTAGCTCACACTCAACTCAACACAANACACAGATTCCATTCCAAAAAATGGGTCTGTGCACTTCAAAACCACTCTCCCCTCCCAATTCCGGCACCCACTCACCTGAAACAGCCACAGACACCACTTTAAACTCCAATGCCAATGCTACTAAGCCCCATCTTCCCAATGGAAGAGAAAAAAACCCTACTCTTACCCCAAACCACGGTAAAAAATCTCCCTTTTTCCCTTTTTACAGTCCAAGCCCGGCGCACCACTTGTTCTCTGGCAAGTTTCCGTCGACGGGAACGCCGAGGAGGTTCTTCAAGCCGCCGTCACCGGCGAAGCACATAAGGGCCGTGCTTGCTCGTCGACACGGCTCCGTGAAGCCCAACGAGTCAACCACCACCATTCCGGAAGGGAGTGAAGCGGAGGAGACGGTGGGGGTTGCTCTGGACAAGAATTTCGGGTTCTCGAAGCATTTTGGGCACAAGTACCAGCTTGGTGAAGAGGTTGGGAGAGGACACTTCGGTTACACTTGTGCTGCAAAATCCATCAAGGGTGAACTCAAGGGTCATCAGGTCGCTGTCAAGGTCATCCCAAAAGCCAAGATGACTACTGCTATTGCTATTGAGGATGTGAGGAGGGAAGTGAAAATATTGAGGGCTTTGACTGGACACAGAAATCTAATACAATTCTACGATGCTTATGAAGATCACGATAATGTCTATATAGTAATGGAGTTGTGTGAAGGAGGGGAGCTTTTGGACAGAATACTATCGAGAGGTGGGAAATACACAGAGGAAGATGCAAAAGCTGTCATGACGCAAATACTGAATGTGGTTGCATTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTCAANCCTGAGAACTTCTTGTTTACATCCAAAGACGAGAACTCAGAGTTGAAGGCCATAGACTTTGGCTTCCGTCCATTTTGGGCACGGACTGAATCTGGGATCTTTCGTGCTGTATTGAAAGCCGATCCAATTTTTGATGAACCTCCTTGGCCTTCTTTGTCGGATGAGGCAAAGGATTTTGTTAAGCGATTACTAAATAAAGATCCAAGGAAAAGAATGACTGCATCACAAGCATTGNGTCATCCGTGGATTAAAAATTATAAGGACGTCAAAGTACCCCTGGATATTTTAGTGTTCAAGCTCATAAAGGCATACCTGCGTTCCTCCTCTCTACGGAAAGCAGCTTTAAGGGCTCTGTCTAAGACGTTAGCTATTGATGAGCTGAATTATTTGAAGGAGCAGTTTGCACTTTTAGAGCCAAACAAAAATGGCACCATTAGCTTGGAAAATATCAAAGCGCTTAGTGCCTTGCAGTATAGAAGGATGGATTTTGACGAGTTCTGTGCAGCTGCACTTAGTGTTCATCAACTTGAAGCACTTGACCGGTGGGAGCAACATGCACGCTGTGCCTATGAACTATTTGAAAAGGATGGAAACAGGGCTATAGTCATTGAGGAACTAGCTTCGGAGCTTGGCCTTGGTCCATCTGTCCCTGTTCATGCTGTTCTTCATGACTGGATTAGGCACACCGACGGAAAGTTAAGCTTCCTTGGGTTTGTTAAGTTGTTGCACGGTCCATCTCGTAGTCTTGTAAGACCTCAGTAGAAAGTTTGGAAGCCTCATCAGAATAGANTACCAAAGAGCATGCTCAGTTATACCATGATGATTATGTGGCCAATAAAATTCTGGTCCACACATCATCAAGGGATCTTTGCCACTGTTGGATTATACTCATCAAGGGTTCTGTTCCTCGTTCTATAATGCTGGAGCTCTTACCCCACTTTGGATCAGGAGTCAAACCTGCTCNTACAGGCTTTTTTATTTTATATTTTTCCACTGTAAAGCTGTCGTGTGTTAAGGTGCAGGTGATAATATTTTGTGATTGTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00733	118733	122774	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000733s00026527.1	PF00069.20	Pkinase	142	294	6.10E-35
Glyur000733s00026527.1	PF00069.20	Pkinase	301	355	1.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.819
SRR1783600	control	32.635
SRR1783602	moderate drought stress	25.559
SRR1811619	moderate drought stress	25.824

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.585
DRR006520	Root Summer glycyrrhizin high producing strain	15.342
DRR006521	Root Winter glycyrrhizin high producing strain	2.689
DRR006522	Root Winter glycyrrhizin high producing strain	2.644
DRR006523	Root Summer glycyrrhizin low producing strain	13.394
DRR006524	Root Summer glycyrrhizin low producing strain	13.439
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.311
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.979

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.991
SRR2868004	Drought Stress (root)	15.802
SRR2967015	Control (root)	14.907

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.243
SRR9715740	Leaf	7.068
SRR9715741	Leaf	8.554
SRR9715739	Root	15.540
SRR9715742	Root	29.458
SRR9715743	Root	25.507

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.310
SRR8749028	MeJA induced 9h	8.342
SRR8749029	MeJA induced 9h	3.437
SRR8749030	Uninduced	1.983
SRR8749031	Uninduced	0.902
SRR8749032	Uninduced	0.644

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.165
SRR8400027	Control - Root	36.165