Gene detail

Gene detail information of Glyur000733s00026524

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50560.1	6.00E-79	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004509160.1	2.38E-127	PREDICTED: uncharacterized oxidoreductase YoxD-like [Cicer arietinum]
COG	YP_645735.1	3.00E-43	short-chain dehydrogenase/reductase SDR [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|F4JZN6\|TC10B_ARATH	6.00E-11	3-dehydrosphinganine reductase TSC10B
trEMBL	tr\|V7CF89\|V7CF89_PHAVU	2.00E-125	Uncharacterized protein {ECO:0000313\|EMBL:ESW27940.1}

Sequence

Transcript Sequence

>Glyur000733s00026524.1
CGTGTTAAGGTCCCTCTTGTTGAGGCAACACACACAAGGGTGGACTAGCTGGAGATTAATGATTCAGACAGGCAGAGGACATTTCACCATCTCCCAAATACCCACCTTAACTCTTTCGTCTCCATTCCACTCCACTAGCTAGCTACTTAAATCCCTNCCTTCCTTTCCTCTTCCATCTACCCCTACCCCTTATTACACCTGCTTCCCTCTCGCTGCTACTTTTATTTGCTACACTTCCCACTCCTAATTTTAATTAATCAACAGCCACCCAATTGTCGTTAATTAATTCTTCCCCCTGTTCCTTAATTTTCTGGCACGTCGCTCAGCTCACCGGTTCAGTCACACTCACAGGCACAAGATATACATACATAATCGAGATGCGAAGCATGGCGAGCTCTGCTTCCTCGCGGGGCATTGCGGCCATCGTCGGGGTGGGGCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAAGGCTACACCGTCGCCATCCTCGCTCGTGACTTAGGGAGGCTTTCAAGATTTGCGGACGAAATAGCTCGGGAGGAGAAGGCACAGGTGTTTGCGATACGAATCGATTGTTCGGATTCGAGAAGCGTGAGGGAAGCGTTCGAAGGAGTGCTGTCTCTGGGATTCGTGGAAGTCCTGGTTTACAATGCTTACCAGCCACCCCTCCCATTCAAACCCACCTCCTTCCAACACCTCTCCCTCCACTCCTTCCAATCATCCCTCGCCGTTTCATCCCTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGAATGGTTGAAAGAGGAAAGGGCACAATTCTCTTCACCGGCTGCTCCGCTTCTCTAAACGGCATTGCCGGATACTCTGAACTATGCTGTGGGAAATTCGCATTGAGAGCACTATCGCAGTGCCTGGCGAGGGAATTTCAACCCCAGGGAGTGCACGTAGCCCATGTTATCATTGATGGTGTCATTGGCCCACCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00733	108479	109841	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000733s00026524.1	PF00106.20	adh_short	13	182	3.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.721
SRR1783600	control	0.905
SRR1783602	moderate drought stress	1.784
SRR1811619	moderate drought stress	1.613

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.699
DRR006524	Root Summer glycyrrhizin low producing strain	0.700
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.274
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.165

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.052
SRR2868004	Drought Stress (root)	3.385
SRR2967015	Control (root)	1.204

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.069
SRR9715740	Leaf	16.956
SRR9715741	Leaf	16.350
SRR9715739	Root	0.219
SRR9715742	Root	0.505
SRR9715743	Root	1.307

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.353
SRR8749028	MeJA induced 9h	3.499
SRR8749029	MeJA induced 9h	1.328
SRR8749030	Uninduced	0.223
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.058

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.605
SRR8400027	Control - Root	4.763