Gene detail information of Glyur000733s00026521 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37080.3 | 3.00E-164 | Protein of unknown function, DUF547 |
| NR | XP_006600997.1 | 0 | PREDICTED: uncharacterized protein LOC100780747 isoform X3 [Glycine max] |
| COG | YP_001998414.1 | 1.00E-12 | glycoside hydrolase 15-like protein [Chlorobaculum parvum NCIB 8327] |
| trEMBL | tr|K7MM81|K7MM81_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G20320.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00733 | 74029 | 79082 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000733s00026521.1 | PF14389.1 | Lzipper-MIP1 | 40 | 123 | 2.10E-24 |
| Glyur000733s00026521.1 | PF04784.9 | DUF547 | 393 | 525 | 2.30E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.022 |
| SRR1783600 | control | 5.294 |
| SRR1783602 | moderate drought stress | 3.142 |
| SRR1811619 | moderate drought stress | 2.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.132 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.103 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.084 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.046 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.309 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.236 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.967 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.911 |
| SRR2868004 | Drought Stress (root) | 6.791 |
| SRR2967015 | Control (root) | 6.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.777 |
| SRR9715740 | Leaf | 1.584 |
| SRR9715741 | Leaf | 3.737 |
| SRR9715739 | Root | 0.264 |
| SRR9715742 | Root | 1.862 |
| SRR9715743 | Root | 1.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.026 |
| SRR8749029 | MeJA induced 9h | 0.012 |
| SRR8749030 | Uninduced | 0.027 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.076 |
| SRR8400027 | Control - Root | 7.713 |