Gene detail

Gene detail information of Glyur000732s00027544

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34430.1	6.00E-133	light-harvesting chlorophyll-protein complex II subunit B1
NR	XP_004234241.1	0	PREDICTED: uncharacterized protein LOC101245729 [Solanum lycopersicum]
Swissprot	tr\|P27495\|CB24_TOBAC	2.00E-176	Chlorophyll a-b binding protein 40, chloroplastic (Precursor)
trEMBL	tr\|A8HPF9\|A8HPF9_EUGGR	0	Chloroplast light-harvesting complex II protein {ECO:0000313\|EMBL:ABW06955.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000732s00027544.1
ATGGCTGCTTCAACAATGGCTCTCTCTTCTCCATCATTGGCCGGGCAGGTAATCAAGCTTGCCCCCTCTTCCCAACACCTTGGGCATGGAAGGGTCACCATGAGGAAAGCAGCTGCCAAGACCGTTTCTTCTGGAAGCCCATGGTATGGCCCAGACCGTGTCAAGTACTTGGGCCCATTCTCCGGTGAACCCCCGTCCTACCTCACTGGTGAATTCCCTGGTGACTATGGTTGGGACACTGCCGGACTTTCTGCTGACCCAGAGACATTTGCCAAAAACCGTGAGCTCGAGGTCATCCATTGCAGGTGGGCCATGTTGGGAGCCTTGGGCTGCGTCTTCCCTGAGCTCTTGGCCCGCAACGGTGTTAAATTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATTTTCAGTGAGGGTGGGCTTGACTACTTGAGCAACCCAAGCCTAATCCACGCACAAAGCATCCTTGCCATCTGGGCGTGCCAAGTTATCTTAATGGGCGCCATTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTGACTGACCCACTCTACCCAGGTGGCAGCTTTGACCCATTGGGCCTCGCTGACGACCCAGAGGCTTTTGCAGAGTTGAAGGTGAAAGAGATCAAGAATGGAAGGTTAGCCATGTTCTCTATGTTCGGGTTCTTTGTTCAAGCCATTGTGACTGGAAAGGGGCCTTTGGAAAACCTTGCTGACCATCTCGTTGACCCAGTCAACAACAATGCTTGGGCCTATGCCACAAACTTTGTCCCTGGAAAAATTCTACAATGGCTGCTTCAACAATGGCTCTCTCTTCTCTATCATTGGCCGGGAACGCAATCAAGCTTGCCCCCTCTTCCCAACTCCCAAGACCTTGGGCTTGGAAGGGTCACCATGAGGAAAACAGCTGCCAAGACCGTTTCTTCTGGAAGCCCGTGGTATGGCCCAGACCGTGTCAAGTACTTGGGCCCATTCTCTGGTGAGCCCCCGTCCTACCTCACTGGTGAATTCCCCAGTGACTATGGTTGGGACACTGTCGAGCTTTCAGCTGACCCAGAAACATTTGCCAAAAACTGTGAGCTCGAGGTCATCCACTGCAGATGGGCTATGTTGGGAGCCTTGGGTTGTGTCTTCCCTAAGCTCTTGGCCCGCAACGGTGTCAAATTCAGCGAGGCCGTGTGGTTCAAGGCCAGCTCCCAAATCTTCAGTGAGGGTGGGTTTGACTACTTGGGCAACCCAAGCCTAATCCACGCACAGAGCATCCTTGCCATATGGGCTTGCCAAGTTATCTTGATGGCCGCCGTTGAGGGTTATCGTATTGCTGGTGGGACTCTCGGTGAGGTGACCGACCCACTCTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCAGAGTTGAAGGTGAAAGAGATGAAAAACGATAGCCATGTTCTCTATGTTCGGATTCTTCGTTCACGCCATTGTAACTGGAAAGGGACATTTGGAGAACCTTGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00732	96199	101208	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009765 photosynthesis, light harvesting

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000732s00027544.1	PF00504.16	Chloroa_b-bind	64	230	9.00E-50
Glyur000732s00027544.1	PF00504.16	Chloroa_b-bind	333	484	1.20E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.024
SRR1811619	moderate drought stress	0.048

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.108
DRR006520	Root Summer glycyrrhizin high producing strain	0.207
DRR006521	Root Winter glycyrrhizin high producing strain	0.072
DRR006522	Root Winter glycyrrhizin high producing strain	0.070
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	137.492
DRR006526	Leaf Summer glycyrrhizin high producing strain	137.955

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.190
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.021
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.011