Gene detail

Gene detail information of Glyur000732s00027535.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76730.1	2.00E-123	NagB/RpiA/CoA transferase-like superfamily protein
NR	AFK45881.1	0	unknown [Medicago truncatula]
COG	YP_004781057.1	9.00E-60	5-formyltetrahydrofolate cyclo-ligase [Pyrolobus fumarii 1A]
Swissprot	tr\|Q9SRE0\|5FCLL_ARATH	1.00E-161	5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 (Precursor)
trEMBL	tr\|I3T039\|I3T039_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK45881.1}

Sequence

Transcript Sequence

>Glyur000732s00027535.2
CATTTTTCTGATGTAAAAAAAAAACTCATTTTTCTCTCTCTCGCAAGTGGTACGCGTATCAGTGTATGTAATTGTAACGGACCATAATTTCAAACCTGNCATTTGTTTGGCGTAAAAAAATGGGGGTACTCCATTTATGGTATCCATTCCCTCTCACTTTCACTCTCAGCAAAAACCATTGCAATCTCCGCTCTCTCTCAACCAACCCTCACACGAATCGAAGTCGCAGCAATCGCAGGTGGTTCAAGCTGGAAGCCAGCAACAGCAACAGCAACAGCAGAAAGGCCTTCGACGAGGCTGCTTTCGAGGCGGAGCGGCTCGCCCTCGACGCGGAGGCCCGCCAAGCCATGGCGGCGGAGGAGGCTACCCTCCGAGACGACGCGAAAGCTTGGAAATGGGTTATTCGAAAGCGGATATGGGATTCCATGGAGGCACAGAACTTCGCCCAGAACCCCCGACCCGTTCACCACCGNATCCCCAATTTCGTTGGCGCTTCTGTTGCCGCTGACAAGATGAGGGAGCTAGATGTGTTTCGTGTTGCACAATGTGTTAAGGTTAATCCAGACTCTCCTCAGAAACAAGTCAGGTTTCTCACTCTCTCAGACGGAAAGAAGTTGTTAACTCCTCAGCCACGGCTGAGGACAGGTTTTTTCTCTGTACTTGAGTCCAATATGTTAACTCCGGGTACCATCAAAGAAGCCTGTACTTCTGTTGGGGTTGCCAAGCATGGACGGCCAATCGGGTTAGATGAAAAGATAAAGGTAGATCTTATTGTTATTGGATCTGTTGCTGTTGACCCGAGGACAGAGAGGACTGAAGTGCAGGGATTTGCAGAACTTGAATATGGTATGCTACGGTACATGGGATCTATTGATGATTCAACACCAGTTGTTACCTCTGTGCATGACTGCCAATTGGTGGATGATATTCCAGTTGAAAAGCTGTTAATCCATGATGTACCAGTGGATATCATTTGTACTCCAACCCAGGTCATTTTCACACACACGTNTATTCCAAAGCCTCAAGGAATTTATTGGGACAAATTGTCTCCTGAGAAGCTGGGACAAATTCGGATACTTAGAGAGCTCAAGAAGAGGATTGAACGAGAGACTGGACAGAAGCTTCCTACTGGTCCATCAGAGAAACTACCCCCTACTGCTCAACGAAGTTGAAGGGGTTAACTTTGTAAATGTCAGTTTTCATGGATTTGTGTATATATTGGAAATATTTGAATATATATACTAAAAAAGAAGAAATGTTTAATAAGGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00732	48698	54271	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01934	MTHFS	EC:6.3.3.2	One carbon pool by folate	map00670
			One carbon pool by folate	map00670

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000732s00027535.2	PF01812.15	5-FTHF_cyc-lig	92	288	4.30E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.721
SRR1783600	control	10.584
SRR1783602	moderate drought stress	9.102
SRR1811619	moderate drought stress	9.372

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.456
DRR006520	Root Summer glycyrrhizin high producing strain	8.773
DRR006521	Root Winter glycyrrhizin high producing strain	5.909
DRR006522	Root Winter glycyrrhizin high producing strain	5.549
DRR006523	Root Summer glycyrrhizin low producing strain	13.182
DRR006524	Root Summer glycyrrhizin low producing strain	13.074
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.037
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.917

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.795
SRR2868004	Drought Stress (root)	7.704
SRR2967015	Control (root)	7.516

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.836
SRR9715740	Leaf	17.574
SRR9715741	Leaf	18.181
SRR9715739	Root	5.478
SRR9715742	Root	5.026
SRR9715743	Root	6.641

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.300
SRR8749028	MeJA induced 9h	6.166
SRR8749029	MeJA induced 9h	6.984
SRR8749030	Uninduced	9.591
SRR8749031	Uninduced	9.017
SRR8749032	Uninduced	8.270

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.119
SRR8400027	Control - Root	12.159