Gene detail

Gene detail information of Glyur000731s00024688

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G45010.1	0	serine carboxypeptidase-like 48
NR	XP_003540200.1	0	PREDICTED: serine carboxypeptidase-like 48-like [Glycine max]
COG	YP_002430787.1	1.00E-40	peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|Q56WF8\|SCP48_ARATH	0	Serine carboxypeptidase-like 48 (Precursor)
trEMBL	tr\|I1LTM8\|I1LTM8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G30160.1}

Sequence

Transcript Sequence

>Glyur000731s00024688.1
TGTAGTCTTAATTTAAATTAAATTAAATAGAAACCTGAAGATTGTTGGAAACGTGTTAACCCTCTCATACTCAACTCAACTTTCCCATTATACTTGGCAGTTTTGCTTGCATAGGCAGATAAAGAGCACTATAAATTCACAGCCATTTGCCACTACTTTTCCAATGAAATTAAGGCAGAACAAAATGGCATCATCATCGTCAAGGTTCCTCAAAATGTCTCTGTCTTCTTCTATGTTGTTCCTCTTGTTGCTCATCTCTATTTCACCTTCTTTCTCATCTCCCACAAGCAATGACCTTCGCTTTTCTTCAACCGCATCACTCCCAAAACTACAAGCAGAAAGGCTCATAAGGGGGCTTAANCTTTTCCCAAAAGATTCCATTAACACACCAGAGAAAGACCCTCATTTTGTCACTGCTGGAAACATAGTTGAGAAGAAGTTCACTTTCCCTGGTTTTAATGCTGCCTCTGGAGCTTCTGTTGAAGACCTTGGACACCATGCAGGGTATTATCGCCTTCCTCGTTCCAAAGCTGCAAGGATGTTCTACTTTTTCTTTGAATCTCGGAGTAATAAGGATGACCCTGTTGTCATATGGTTGACTGGAGGTCCAGGATGCAGCAGTGAACTAGCTCTGTTTTATGAAAATGGTCCTTTTCAATTTACCAAGAATTTGTCTCTTGTTTGGAATGAATATGGATGGGACAAGGCATCAAATATTCTATTTGTAGACCAACCTACTGGGACGGGTTTCAGCTATACCACTGATGAGAGTGATATTCGTCATGATGAAGGTGGTGTTAGCAATGATCTGTATGACTTCTTGCAGGCATTTTTCAAGGAACACCCTCAGTTCACTAAGAATGACTTCTATATTACTGGAGAATCATATGCTGGACACTACATTCCAGCTCTTGCATCCAGGGTTCACCAAGGAAACAAAGCAAAAGAAGGAATTCATATAAATCTAAAGGGTTTTGCTATTGGTAATGGGTTAACCAATCCTGAAATTCAGTACCAAGCATATACGGATTATGCATTAGACAGGGGACTAATTAAAAAGTCTGACTATGACAACATCAAAAAGTTGATCCCGCCATGTCAGCAGGCCACAAAAGCTTGTGGCACTGAAGGTGGAGATACATGCATATCTTCGTTATATGTATGCAATCGCATATTCAATGAGATCATGTCCATCGCTGNCAACATTAATTACTATGACATTAGAAAGGAATGTGTGGGAGATCTGTGTTATGACTTCTCCAACTTGGACACATTCTTAAACAAAAAGACAGTAAGGGAAGCTTTAGGTGTTGGGGACTTAGACTTTGTCTCGTGCAGTAGCACAGTGTATGATGCCATGATGCAGGACTGGATGAGGAATCTGGAAGTGGGTATTCCTGCTCTTCTTGAGGATGGAATCAAAGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAATTGGCTTGTCCCATTTTTGGTGGATGGTGCAGAAGCAGGAGTGGTGAAAAGCCACGGACCTCTTGCTTTCCTCAAGGTGAATGAGGCTGGTCACATGGTCCCTATGGATCAACCAAAAGCTGCACTTCAGATGCTAAGAGGCTGGATGCAAGGGCGACTCATAATGACAAGGGACGGAGACAATCACAAAACCAAAATAATCCTCGTGTTGTTCCCCAAAATGACTTGGTCTTTTATGTTGTTGCTCGTGGTGTTCATCTTCATTTCACCATCTTTCTCATCTCCAACTTATCCCACAAGCAATGACCTTCGCTTTTCTTCAACTACATCCCTNCAAAAACTAGTAGCAGAAAAGCTCATAAGAGGGCTTAACCTTTTCCCAAAAGATTCCATTAACATACCAGAGAATGACCCACATTTTGTCACTGGAAACATTGTGGAGAAGAAGTTCACTTTTCCTGGTCTTGATGTTGCCTCTGGACCTTCTGCATCAAATATTATATTTGTAGACCAACCCATTGGAACGGGTTTCAGCTATACCACTGATAAGAGTGACATTCGCCATGATGAAGAAGGTNTTAGCAATGATTTGTATTACTTCTTGCAGGCATTTTTCGAGGCACACCCTATGTTCACTCAGAATGACTTTTATATTACTGGAGAGTCATATGCNGGACATTATGTTCCAGCTCTTGCAACTCGGGTTAATCATGGAAATAAGTTTAAAGAAGGAATTCAGATAAATCTAAAGGGTTTTGCTATTGGTAATGGTTTAACCAATCCTGAAATTCAGTNCCAATCATATACAGACTATGCATTAGACATGGGACTAATTAAACAGGCTGATCATGACAGCATCAACGAGTTGATCCCACCATGTCAGCAGTCCATAAAAACTTGTGGTAAAATTCATACCACTACAACTAAAGGTGGNGACGCATGCCTAACTTCGTTGAATGTTTGCAATGAAATATTCTCTCGGATCTACTATGACATTAGAAAGGAATGTGTGGGAGCATTATGCTATGACTTCTCCGACGTGGAGACATTCTTAAACAAGAAGATAGTAAGGGATGTTTTACGTGTTGGAGACTTAAACTATGTTTCGTGCAGTACCACAGTATATAATGCCATGTTGCAGGATATGATGAGAAATCTAGAAGTTAATATTCCTTTTCTTCTTGAAGATTGGATGAAGGTGCTTGTGTATGCTGGAGAAGATGATCTCATATGCAATTGGCTTGGGAATTCAAGGTGGGTTCATGCCATGGAATGGTCAGGTCAGAAAATATTTGGGGCAACTCTTCCAGTCCCATTTTTGGTTGATGATGTAGAAGNAGGAATGCTGAAAAGTTATGGACCTCTCACTTTCCTCAAGGTGTATAAGGCTGGTCACATGGTCCCAATGGATCAACCAAAAGCTGCACTAGAGATGCTAAGAGGNTGGATGCATGGGCAACTGATAACAACAAGGGGAGGAGATAATGNCTCTCCTAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00731	106790	116780	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000731s00024688.1	PF00450.17	Peptidase_S10	108	484	4.00E-116
Glyur000731s00024688.1	PF00450.17	Peptidase_S10	595	918	5.00E-90

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.569
SRR1783600	control	11.669
SRR1783602	moderate drought stress	4.600
SRR1811619	moderate drought stress	5.232

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.328
DRR006520	Root Summer glycyrrhizin high producing strain	40.989
DRR006521	Root Winter glycyrrhizin high producing strain	2.812
DRR006522	Root Winter glycyrrhizin high producing strain	2.745
DRR006523	Root Summer glycyrrhizin low producing strain	96.795
DRR006524	Root Summer glycyrrhizin low producing strain	101.197
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.745
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.815

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.330
SRR2868004	Drought Stress (root)	22.285
SRR2967015	Control (root)	25.534

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.071
SRR9715740	Leaf	0.396
SRR9715741	Leaf	0.368
SRR9715739	Root	3.700
SRR9715742	Root	32.563
SRR9715743	Root	27.785

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.616
SRR8749028	MeJA induced 9h	1.768
SRR8749029	MeJA induced 9h	1.141
SRR8749030	Uninduced	2.583
SRR8749031	Uninduced	1.210
SRR8749032	Uninduced	1.010

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.346
SRR8400027	Control - Root	27.782