Gene detail

Gene detail information of Glyur000731s00024683

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57620.1	6.00E-62	myb domain protein 36
NR	XP_007150152.1	7.08E-121	hypothetical protein PHAVU_005G131300g [Phaseolus vulgaris]
Swissprot	tr\|Q9SJL7\|RAX2_ARATH	4.00E-73	Transcription factor RAX2
trEMBL	tr\|V7BZV3\|V7BZV3_PHAVU	3.00E-121	Uncharacterized protein {ECO:0000313\|EMBL:ESW22146.1}

Sequence

Transcript Sequence

>Glyur000731s00024683.1
ATGCTTGCTTTCATTTCAGTCTTGAGCATATCTCTCTATATCTCTGAAATATATAATAAAATAACAATTTATGGACTGTTCAAAAAAGAGGTCTCTTGTTATAAGGCAGAAGCAGGAGCAGTCCCCACAAAAGAGGCGAGTATTATTATCAGATTCAGAGGGAGAAGAGAAATGGGGAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAAAGGGCCATGGTCACCTGAAGAAGACTCAAAGCTGAAGGAGTATATCCAGAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGCAGATTGAGGTGGCTGAACTATCTGAGGCCCAACATTAAGCACGGAGAATTCTCAGACGAGGAAGACAGAATCATTTGCAGCCTTTACTCTAATATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGCAGGACTGACAATGATATCAAGAACTACTGGAACACCAAACTAAAGAAGAAGCTCATGGCCGGGTTCCTTCCTTCATCGCCTCATCACAGATCAAAACTACCACCCTATCATGAATCCCCTCCTCAAAACCCACCTTCATCATTTCCTCCTTCTCACTACAGAGACTACTGCAGTAGCAGCTCTTATTACAACCCAGCACCACCACTACCAAACCACATCTCTTTCACTACTACTGCAGGCCACCTTGAACCATTTTCTGTTCCTTCNAGTAGTTGCTATGCAAGTACAACAACAGCCTCAATTGCCTCTCACCCTTTTTACCAAAACCAAGAATCCTCCTTGGTTAGTCATGTGATTAGTCCCATGCAATGTTATAATTATCCTATCACCACTGACAGATCACTTCTCATGTTTGGAAGTGAAGCAAGTTGCAGTTCATCTGATGGGAGCTGTAGTCATGGGAAACAAGAAGAAATGATGATGGGGTTTCAGAATTTCATGTACAGCAGCAGCAACAAGTCCATGCTTTGTAATGATGGGGGTGAACATGTTAACCAATATTGGGAACCAGAAAAGCCAATAAGTAACGGGTGCTTTTTTCAAACGCAAAGTGGTGGTAGTACTACTCCATTGGATTATGACCTTGAGGTGATTAAGCAACTGATTAGTAGTAATAGTAGTAGTGGCTATGGTTTCAGTGTTGATGATGAAAACAAGACGGAGGANAAGGCCATGTTGTACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00731	78897	80695	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000731s00024683.1	PF00249.26	Myb_DNA-binding	71	119	1.60E-14
Glyur000731s00024683.1	PF00249.26	Myb_DNA-binding	126	168	1.10E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.347
SRR1783600	control	13.522
SRR1783602	moderate drought stress	13.331
SRR1811619	moderate drought stress	12.666

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.089
DRR006520	Root Summer glycyrrhizin high producing strain	0.088
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.477
SRR2868004	Drought Stress (root)	52.346
SRR2967015	Control (root)	77.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.157
SRR9715741	Leaf	0.654
SRR9715739	Root	9.133
SRR9715742	Root	8.562
SRR9715743	Root	9.625

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.406
SRR8749028	MeJA induced 9h	14.470
SRR8749029	MeJA induced 9h	2.401
SRR8749030	Uninduced	14.065
SRR8749031	Uninduced	0.120
SRR8749032	Uninduced	0.834

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.243
SRR8400027	Control - Root	33.503