Gene detail information of Glyur000731s00024682 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05160.1 | 0 | AMP-dependent synthetase and ligase family protein |
| NR | KEH39397.1 | 0 | 4-coumarate:CoA ligase-like protein [Medicago truncatula] |
| COG | YP_003291469.1 | 2.00E-133 | AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252] |
| Swissprot | tr|Q9M0X9|4CLL7_ARATH | 0 | 4-coumarate--CoA ligase-like 7 |
| trEMBL | tr|A0A072VCC0|A0A072VCC0_MEDTR | 0 | 4-coumarate:CoA ligase-like protein {ECO:0000313|EMBL:KEH39397.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00731 | 70833 | 76487 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01904 | 4CL | EC:6.2.1.12 | Phenylalanine metabolism | map00360 |
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000731s00024682.1 | PF00501.23 | AMP-binding | 35 | 437 | 9.50E-99 |
| Glyur000731s00024682.1 | PF13193.1 | AMP-binding_C | 446 | 521 | 1.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.732 |
| SRR1783600 | control | 18.659 |
| SRR1783602 | moderate drought stress | 17.930 |
| SRR1811619 | moderate drought stress | 17.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.688 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.709 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.472 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.511 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.800 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.621 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.715 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 90.167 |
| SRR2868004 | Drought Stress (root) | 108.022 |
| SRR2967015 | Control (root) | 102.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 72.054 |
| SRR9715740 | Leaf | 18.821 |
| SRR9715741 | Leaf | 91.117 |
| SRR9715739 | Root | 5.783 |
| SRR9715742 | Root | 29.087 |
| SRR9715743 | Root | 22.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.454 |
| SRR8749028 | MeJA induced 9h | 74.237 |
| SRR8749029 | MeJA induced 9h | 39.000 |
| SRR8749030 | Uninduced | 93.138 |
| SRR8749031 | Uninduced | 48.041 |
| SRR8749032 | Uninduced | 54.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.389 |
| SRR8400027 | Control - Root | 17.124 |