Gene detail

Gene detail information of Glyur000731s00024676

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G45040.1	2.00E-158	phosphatidate cytidylyltransferase family protein
NR	XP_003638051.1	0	Dolichol kinase [Medicago truncatula]
trEMBL	tr\|G8A151\|G8A151_MEDTR	0	Phosphatidate cytidylyltransferase family protein {ECO:0000313\|EMBL:KEH39386.1}

Sequence

Transcript Sequence

>Glyur000731s00024676.1
GAAAAGTTGGTTAATCTGAACTGATAATTAATGAATGGGAATACTGGAATAGTCTCCCAAACGCCAAACCGCGTAATTTGACNATGACAAATGCGTTTGGAGGTATCAGAAAGGAATGGGAATTGTGGCTTATTCTCTCATCGTTTGCTTCGGTGTATGATATCAGATCTCTTCTTCTTCCCGCGTAAAAGTAAAACCCCAACCCAATTATCCCCTTCCATGACGACGTCGTTGCTGAACGGCGAGAGAGTCGTGGTGCTGTTGTTCATCTTTAGGATCCTTTACTCCCTCCCTCTCTCTCTCCTCTCCCATGGCGTTGCTCTCTCTCTCCTCGCTCTCGCCTCCTTCTTCCTCGAGATCTCCGTCGAATCTTCCAATTCCCCCTTCCCTTTCCGCACCAGGCCCGGGGCTTCCTCGGGGATTCTACTCGGCGCTGTCACTCTCCCTTCTCTTATTCTCTCCAAGCTGTTACAGTCATCACGTGGATTCTCGCTCGCTCAAATTCAACCCCAAGAGATTCAATATCTGACATTGCAATACTGGGCCACATCTGCCAGCGTCTTCGGTGTGCTTTTGTTCCTCGCCTTGGCNCTACGGCATTCTCATTGGGGTGTGAGGTTTAGCTTCTGTTTCATTCTCTTTCAAGCTCTCCTCTGCATTGCGGCCCTTGCTACCACTTCGCAAATTGGCTTGCACCCTGCACTGAAGCTTTCCTGGGTCTNTTGCCATGGATTGGCATCCGTGAAGCTAATTCAGCATTTCCTAAGAACTTTTCCGGCTTGTGCTTCCATTGGGGAAGCATTTTTGGTGGCTGCTGGCATTGTTCTCTATTTTGGTGACATGTTGTTGCTTACTATTAAAAAGCTATGTGGACTATTAGTGTCATCAGAGTTGGTTACTGCAGAATATGAAATAAGTCGAAGTGAGATAAGCATTATAATTCAGGGTTTTGTGCTTGGTCTTCTGCTCTATCCAATAGCTTTGAAATATATTCTCCAAATATGGNACTGCTCCATAAATACAGCTTCTTCTGAACAAAGAAGATACTACGAGATTGGGAGATCTCTTATGTTTATTGCTTCCCTTGGATTTGTCCTGATTGTGATTGTACCATTATGGATGCAGGTGCTTTCCTTTGTTTTCTCGGAGCCATCCAAAAGACTGTCATTATGTATCTATTGGATGTGTATAATTTGCGTTTCTGTTTTCCGATTCTATAACATCTCTAAGAACAGTAAGATTGAGAGAATTCTTTTGCGGAAATACTACCATCTGATGGCTGTCTCGATGTTTTTGCCTGCCCTTATCTTCCAGCCAAAATTTCTTGATCTAGCTTTTGGCGCAGCTTTGGCAGTTTTCTTAATATTGGAAATTATTCGAGTATGGAGAATCTGGCCCTTAGGACAACCAANAAATCAATTTATGAATGCATTCACTGATCACCGTGACTCTGATCTTCTCATTGTCAGCCATTTCTCACTCTTACTGGGATGTGCACTCCCTATTTGGATGTCTTCTGGGTACAATGATCGACCTCTTGCTCCTTTTGCCGGAATTTTGAGTCTAGGAATTGGAGATACAATGGCATCAATGGTTGGGCACAAATATGGTGTTTTGAGGTGGAGTAAAACTGGCAAGAAAACAGTTGAAGGTACTGCAGCTGGTATAACGTCTGTACTAGCTGCTTGCTCTTTACTCCTTCCACTCTTAGCATCAACTGGATACATTCTCACTCAGCATTGGTTCTCTCTACTTCTAGCNGTGACTGTAAGTGGTTTGTTGGAGGCCTACACGGCGCAACTTGACAACGCNTTCATACCACTTTTTTTCTATAGTCTTCTCTGTTTGTAGGCACAGATCTCTGTCTCTTTCCTGAGAATGAGTTNCCTTGAGGAGCAATGACGGTTTTCTGCAAAATGTGTCCTGGCTGGGCACATTGTTTTGGCAGAGGTCAGAGAAGTATTAACCAATGCAATGATACATGACAGTTAGGTTTGGTGTACATAGTTAGAATTGTATCTTTCTACAGAAATGATAGGTATACGAGTGTTTTTATTTAAACGGTTGATACCCAACAACACACATAGGATACTGTATGCAGGAGTGACAATTCTCCATTTTTAATGAAACCATGTGTCAGGCTATGAGAAAGGAGAGCTGTTGTAACACTAGTGCACTTGTTCTATAGGACTTTTTAATGTCTTCAATTTTTCACACGTAGAGTACTGTCTTCATTTTCTAAGGTCAGGTTGGCATGTCGGGCGGGGTCCCGCGCACGGGGAATCGTTTGCGAGAGGGGAGAGTAGAAAACTGTCGAAAGTTGAAAATGTGTGAATAAGTAGGGTCATGCCATTGAGGTTGTGTATGTATCGTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00731	36343	43442	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00902	E2.7.1.108	EC:2.7.1.108	N-Glycan biosynthesis	map00510

Gene Ontology

biological_process
GO:0043048 dolichyl monophosphate biosynthetic process

cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane

molecular_function
GO:0004168 dolichol kinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.715
SRR1783600	control	9.685
SRR1783602	moderate drought stress	10.079
SRR1811619	moderate drought stress	10.124

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.233
DRR006520	Root Summer glycyrrhizin high producing strain	8.553
DRR006521	Root Winter glycyrrhizin high producing strain	16.477
DRR006522	Root Winter glycyrrhizin high producing strain	16.090
DRR006523	Root Summer glycyrrhizin low producing strain	23.835
DRR006524	Root Summer glycyrrhizin low producing strain	24.064
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.603
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.610

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.771
SRR2868004	Drought Stress (root)	20.370
SRR2967015	Control (root)	16.319

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.754
SRR9715740	Leaf	35.926
SRR9715741	Leaf	60.712
SRR9715739	Root	9.687
SRR9715742	Root	15.006
SRR9715743	Root	13.012

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.972
SRR8749028	MeJA induced 9h	31.937
SRR8749029	MeJA induced 9h	17.908
SRR8749030	Uninduced	30.385
SRR8749031	Uninduced	32.572
SRR8749032	Uninduced	24.840

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.026
SRR8400027	Control - Root	12.318