Gene detail

Gene detail information of Glyur000731s00024675

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28070.1	0	ABC-2 type transporter family protein
NR	XP_007150161.1	0	hypothetical protein PHAVU_005G132000g [Phaseolus vulgaris]
COG	YP_006982423.1	5.00E-21	ABC transporter ATP-binding protein [Propionibacterium acidipropionici ATCC 4875]
Swissprot	tr\|Q9ZUU9\|AB3G_ARATH	0	ABC transporter G family member 3
trEMBL	tr\|V7BYR5\|V7BYR5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW22155.1}

Sequence

Transcript Sequence

>Glyur000731s00024675.1
GAAGCATATTAATACAAAAAACCCGGGTTCGGCGGGTCAAATGACCCACTCGTCATAAACAAGTTACAAAGGCATTCCTTCAGCTTCCTCAGACTCTCTCACTAACCTTTTCTCTTCCATTCTTCAGTGCTCCTTTTTTTTGTCATTCACTTCCTTAACTTGCTCTCCTTAGATCCAGGCTGTTGATAGACAATGTTCTCTACGAACAGAAAATGTTCTATATGAAAGTTGTGTTTTGTTAACGATTTGACTGCACAGTTTAATTAGTATGCCACAAGGAGAATTCTGCTACTTGTAAAATGATGTCTAGCATTTTATGATATAAGGGGGAAAATTGAAGATCATGGAAGAAATACAGTCTCAGTCTGATAATTATAGGTCCTCATCATCATCTGCAAGCAGTCCGGCGAGTAGGGTGCCATCGAGCAATTTTTTCTATCTGCGTAAACCCGGTTCAATCAGGCAACCCATCTCATTTGAGGATTCACCTGAGTGGGGGGATGATACTGATGTCGATGTTAGAGTTGAATCAGTTGATGAAGGAGGTGACTCTATTAATGTTGCAACAACACCAGCTTCTCCCTCTCTCTNGAAGCTCAACAGCGGGTCCCTGCCATCCCCGCATCTACCAGAGGGTGCAGTTATTCCGCGGAAAATTGCCGGGGCTTCCGTTGCCTGGAAAGATTTGACTGTTACAATAAAGGGAAAAAGGAAGTACTCTGATAAGGTTATCAAGAGTTCAACTGGTTATGCATTACCTGGGACAATGACTGTAATTATGGGGCCTGCTAAATCAGGGAAATCTACCTTATTACGAGCCATTGCAGGTAGATTGCTTCCTTCAGCCAGGATGTACGGTGAAGTGTTTGTGAATGGGACAAAATCGCAAATGCCCTATGGATCATATGGTTATGTGGAGAGAGAAACCACTCTGATTGGATCCCTCACTGTGCGGGAGTTTCTGTATTATTCAGCCCTACTCCAACTTCCTGGTTTCTTTTGTCAGAAAAAGAGTGTTGTAGAGGATGCTATACATGCAATGTCTTTAGGTGAACATGCAAATAAACTTATTGGTGGGCATTGTTATATGAAGGGACTTCCTAGTGGGGAGAGAAGACTTGTTAGCATTGCCAGGGAGCTTGTGATGAGACCGCGTATTTTATTTATAGATGAACCTCTTTATCATTTGGACAGTGTCTCGGCACTTTTGATGATGGTTACACTGAAGAGACTTGCAAGCACTGGTTGCACTCTTATCGTAACAATCTATCAGAGCAGCACAGAAGTCTTTGGTCTTTTTGACCGTATATGTCTGCTTTCAAATGGAAATACCCTGTTCTTTGGAGAAACATTATCTTGCTTGCAGCACTTCTCAAATGCTGGATTTCCTTGCCCAATCATGCAAAGTCCTTCTGATCACTTTCTACGCGCAATTAATACAGATTTTGACAGGATAATTGCAATGTGCAAAAACTGGCAGGATGACAATGGAGATTTTTCTTCTGTAAACATGGACACTGCTGTTGCTATACGCACACTTGAGGCAACTTATAAGTCATCTGCAGATGCAGCTGCTGTTGAAACTATGATTCTGAAACTCACNGAGAAGNAAGGTCCACCTCTCAAAAGCAAAGGGAAAGCTAGCAATGCTACTCGGGTAGCAGTCTTGACATGGAGATCTTTATTAGTCGTGTCAAGGGAATGGAAATATTACTGGCTGCATCTTATTCTTTATATGCTTCTNACGCTTTGCATGGGTACTGTATTTTCTGGTCTGGGGCATTCTCTGTCTTCTGTTGTGACAAGAGTTGCAGCAATTTTTGTATTTGTATCATTCTGTTCCCTTCTAAGCATTGCCAGGGTGCCTGCACTTTTGAAAGAAATCAAGGTATATGCCTGTGAAGAATCAAATCAGCATTCGAGTACATTAGTATTTTTACTTGCACAGCTCCTGTCCAGCATCCCATTTCTTTTTCTCATCTCCATTTCATCAAGTCTAGTCTTCTACTTCCTCGTCGGGCTGGAAGATCAGTTCAGCTTGTTAATGTACTTTGTGCTGAATTTTTTCATGACGCTGTTACTAAATGAAGGGATTATGCTAGTTGTGGCTACTTTGTGGCAAGATGTTTTTTGGAGTGTCTTGACCCTCTTGTGCATACATGTGGTCATGATGCTTTCGGCGGGCTATTTTAGGATTCGAAATGCTTTGCCAGGACCATTTTGGATGTACCCAATGTCCTACATAGCCTTTCATACATACTCTATTCAGGGGCTATTGGAGAATGAGTACCTAGGCACCTCCTTTGCAGTTGGGCAGGTAAGGACCATATCTGGGTTTCAAGCTCTCCAAAGTGCTTACAATATCTCCCCCAACAGTAATTCCAAGTGGACAAATTTGTTGGTTTTGTTTCTTATGGCAATAGGTTATCGTATTTTTGTGTTCATTTTATTATGTTTTTTCGTGGGGAGGAAAATATCCCTGCTTAAAAGTTTCAAGTGTAATAGGGATACAACAAATACAAGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00731	27863	34191	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000731s00024675.1	PF00005.22	ABC_tran	139	279	1.00E-16
Glyur000731s00024675.1	PF01061.19	ABC2_membrane	439	649	5.00E-22
Glyur000731s00024675.2	PF01061.19	ABC2_membrane	406	616	4.60E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.044
SRR1783600	control	15.174
SRR1783602	moderate drought stress	9.206
SRR1811619	moderate drought stress	9.216

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.002
DRR006520	Root Summer glycyrrhizin high producing strain	15.998
DRR006521	Root Winter glycyrrhizin high producing strain	4.052
DRR006522	Root Winter glycyrrhizin high producing strain	3.941
DRR006523	Root Summer glycyrrhizin low producing strain	17.426
DRR006524	Root Summer glycyrrhizin low producing strain	17.232
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.932
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.851

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.220
SRR2868004	Drought Stress (root)	16.987
SRR2967015	Control (root)	16.287

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.428
SRR9715740	Leaf	7.009
SRR9715741	Leaf	7.539
SRR9715739	Root	5.898
SRR9715742	Root	9.265
SRR9715743	Root	8.751

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.077
SRR8749028	MeJA induced 9h	18.678
SRR8749029	MeJA induced 9h	10.943
SRR8749030	Uninduced	1.857
SRR8749031	Uninduced	0.393
SRR8749032	Uninduced	0.879

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.505
SRR8400027	Control - Root	25.681