Gene detail information of Glyur000728s00035273 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G58170.1 | 1.00E-53 | Disease resistance-responsive (dirigent-like protein) family protein |
| NR | AFK39378.1 | 6.66E-104 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9C523|DIR19_ARATH | 3.00E-77 | Dirigent protein 19 (Precursor) |
| trEMBL | tr|I3SGI6|I3SGI6_LOTJA | 2.00E-104 | Uncharacterized protein {ECO:0000313|EMBL:AFK39378.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00728 | 88245 | 88868 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000728s00035273.1 | PF03018.9 | Dirigent | 61 | 206 | 2.50E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 165.200 |
| SRR1783600 | control | 164.743 |
| SRR1783602 | moderate drought stress | 58.478 |
| SRR1811619 | moderate drought stress | 56.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 49.616 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.079 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.454 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.443 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.451 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.469 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 152.494 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 150.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 436.465 |
| SRR2868004 | Drought Stress (root) | 315.018 |
| SRR2967015 | Control (root) | 202.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 171.549 |
| SRR9715740 | Leaf | 167.859 |
| SRR9715741 | Leaf | 83.613 |
| SRR9715739 | Root | 202.054 |
| SRR9715742 | Root | 140.072 |
| SRR9715743 | Root | 146.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 67.441 |
| SRR8749028 | MeJA induced 9h | 54.650 |
| SRR8749029 | MeJA induced 9h | 54.108 |
| SRR8749030 | Uninduced | 21.782 |
| SRR8749031 | Uninduced | 7.468 |
| SRR8749032 | Uninduced | 10.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 250.643 |
| SRR8400027 | Control - Root | 196.548 |