Gene detail

Gene detail information of Glyur000727s00025955

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39670.2	4.00E-140	Radical SAM superfamily protein
NR	XP_004490899.1	0	PREDICTED: probable dual-specificity RNA methyltransferase RlmN-like [Cicer arietinum]
COG	YP_007079469.1	6.00E-120	2-vinyl bacteriochlorophyllide hydratase [Pleurocapsa sp. PCC 7327]
trEMBL	tr\|G7KBR0\|G7KBR0_MEDTR	0	23S rRNA m2A2503 methyltransferase {ECO:0000313\|EMBL:AES99363.2}

Sequence

Transcript Sequence

>Glyur000727s00025955.1
CTAAAACAAACGATATTATAACACTACCGAAGGAAGTGAAAGTACTTTTCATTATCTCATTCTGTGGAAGTTCCGGTGAATGTAAGAGCGACAATGCTGGCGCTGCTTCAGCAATGCTCCGTTCCCTTCGCACGTGCGGTGCGTCCTCCACCTCGCACACGTGCCATGGCCCTCGCAGCCTCTTCCCCTCGCACAAGCTCTCAGTCTCAGTCTAAGTCTCAAGTTCTCCTTGGCTTATCCGAGAAGGACCTCCAACAGCTTGCCCTTGACTTGGGTCAGCAAGGCTTTAGGGGGAAGCAACTTTATCATCTTATATACAAGAGGAAGGTCAGAGNAATTCAGGATTTCATTCAGTGTAAGTATTTTTTTGACCCTTTTTTTGTGCCTCAGGCATTTAGGAATGATCTTGAGGAAGCTGGATGGAAGTTGTTGTTAAAGTTGGAGGACAACAGATTGATTGAAACTGTTGGTATTCCAGTTGAAGATGATAAAGGTTCAGTTCGCCTCACAGCATGTGTCTCGTCACAGGTCGGTTGCCCTTTACGATGCTCTTTCTGTGCCACTGGAAAAGGGGGTTTTTCAAGGAATCTTNGGAGTCATGAAATTGTTGAGCAGGTCTTGGCCATTGAGGAGGTCTTCAAGCGCAGGGTGACAAATGTAGTGTTTATGGGAATGGGTGAACCAATGTTAAACCTGAAGGCAGTACTTGAGGCACACCATTGCTTGAATAAGGATGTACAAATTGGGCAAAGAATGATGACCATCTCCACTGTGGGGGTTCCAAATACAATAAAGAAGTTGGCTTCTCACAAACTCCAATCTACTTTAGCTGTGAGCCTACATGCTCCTAACCAGAAACTTAGGGAGACAATTGTTCCAAGTGCAAAATCCTACCCATTGGATGCACTTATGAGTGACTGCAGGGAATACTTCCGGGAAACAAATAGGCGGGTTTCCTTCGAATATGCACTTTTAGCTGGAATCAATGACGAAGTAGACCATGCAGTAGAACTTGCTAAATTACTACATGAATGGGGCCATGTTTATCATGTCAACCTGATACCTTTNAATCCAATAGAAGGCTCCGAGTACCGGCGTCCTTACAGGAAAGCAGTGCAAGCATTTGCTAATGCTTTGGAGTCCAACAAAATAACCGTTAGTGTACGTCAAACCCGAGGACTGGATGCGAATGCAGCTTGTGGTCAGCTACGGAACAATTTCCAGAAAACTCCTTTGAGAAATGTGGTGTGCAGAGACATCTATATTTGCTTGTTGGCAATATTGCTGGAGCATGCAGGACTGGGACATAAGTCTTTGGATTCTATGGCATCTAAGAGGAATTTCATAAGAAACTACCTACAGGGTTACGCTTCAAATAAGTGATTAGGACTTGGAAGTTCGTAGCATGCATGTGGGGGGAGAGATTTTTCCCTGTATAAGACCCCTTTTGCATGATATTTATTTATGTAGCAACTATTGATCCCCCTTTGTAAAAACTGGCTGTTAATTTTTTCTCTGTTAAAATAATTTTTTGTTGTTAAAACCTAAATGTTGTTAAAATCATTTTGGTCACGGGCATGGAGAAATTATTGACTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00727	112502	116649	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006364 rRNA processing

GO:0030488 tRNA methylation

GO:0070475 rRNA base methylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003824 catalytic activity

GO:0008173 RNA methyltransferase activity

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000727s00025955.1	PF04055.16	Radical_SAM	143	300	6.80E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.476
SRR1783600	control	11.469
SRR1783602	moderate drought stress	8.447
SRR1811619	moderate drought stress	8.716

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.991
DRR006520	Root Summer glycyrrhizin high producing strain	12.551
DRR006521	Root Winter glycyrrhizin high producing strain	6.543
DRR006522	Root Winter glycyrrhizin high producing strain	5.946
DRR006523	Root Summer glycyrrhizin low producing strain	11.280
DRR006524	Root Summer glycyrrhizin low producing strain	10.812
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.724
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.253

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.268
SRR2868004	Drought Stress (root)	8.827
SRR2967015	Control (root)	9.745

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.485
SRR9715740	Leaf	29.259
SRR9715741	Leaf	13.982
SRR9715739	Root	4.683
SRR9715742	Root	7.190
SRR9715743	Root	6.657

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.483
SRR8749028	MeJA induced 9h	8.172
SRR8749029	MeJA induced 9h	8.832
SRR8749030	Uninduced	3.356
SRR8749031	Uninduced	1.603
SRR8749032	Uninduced	1.228

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.527
SRR8400027	Control - Root	15.631