Gene detail information of Glyur000727s00025952 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G66510.2 | 9.00E-161 | AAR2 protein family |
| NR | XP_003544236.1 | 0 | PREDICTED: protein AAR2 homolog isoform X1 [Glycine max] |
| trEMBL | tr|I1M859|I1M859_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G07470.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00727 | 94080 | 100023 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000727s00025952.1 | PF05282.6 | AAR2 | 12 | 361 | 1.10E-86 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.877 |
| SRR1783600 | control | 5.031 |
| SRR1783602 | moderate drought stress | 8.860 |
| SRR1811619 | moderate drought stress | 8.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.242 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.072 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.828 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.814 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.682 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.951 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.416 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.370 |
| SRR2868004 | Drought Stress (root) | 7.921 |
| SRR2967015 | Control (root) | 7.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.169 |
| SRR9715740 | Leaf | 10.031 |
| SRR9715741 | Leaf | 9.676 |
| SRR9715739 | Root | 2.530 |
| SRR9715742 | Root | 9.286 |
| SRR9715743 | Root | 8.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.625 |
| SRR8749028 | MeJA induced 9h | 14.045 |
| SRR8749029 | MeJA induced 9h | 17.945 |
| SRR8749030 | Uninduced | 6.411 |
| SRR8749031 | Uninduced | 4.017 |
| SRR8749032 | Uninduced | 5.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.253 |
| SRR8400027 | Control - Root | 18.365 |