Gene detail information of Glyur000726s00027895.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50510.1 | 3.00E-107 | indigoidine synthase A family protein |
| NR | XP_004516912.1 | 3.43E-175 | PREDICTED: pseudouridine-5'-phosphate glycosidase-like isoform X1 [Cicer arietinum] |
| COG | YP_002769853.1 | 9.00E-89 | hypothetical protein BBR47_03720 [Brevibacillus brevis NBRC 100599] |
| trEMBL | tr|I1KZR9|I1KZR9_SOYBN | 8.00E-169 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G00500.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00726 | 87622 | 99879 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K16329 | psuG | EC:4.2.1.70 | Pyrimidine metabolism | map00240 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000726s00027895.1 | PF04227.7 | Indigoidine_A | 61 | 230 | 3.40E-76 |
| Glyur000726s00027895.1 | PF04227.7 | Indigoidine_A | 231 | 318 | 5.00E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.602 |
| SRR1783600 | control | 5.415 |
| SRR1783602 | moderate drought stress | 7.242 |
| SRR1811619 | moderate drought stress | 6.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.061 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.163 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.445 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.076 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.204 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.296 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.003 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.756 |
| SRR2868004 | Drought Stress (root) | 12.921 |
| SRR2967015 | Control (root) | 14.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.393 |
| SRR9715740 | Leaf | 7.918 |
| SRR9715741 | Leaf | 8.512 |
| SRR9715739 | Root | 2.201 |
| SRR9715742 | Root | 5.164 |
| SRR9715743 | Root | 3.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.040 |
| SRR8749028 | MeJA induced 9h | 7.528 |
| SRR8749029 | MeJA induced 9h | 14.751 |
| SRR8749030 | Uninduced | 6.160 |
| SRR8749031 | Uninduced | 5.910 |
| SRR8749032 | Uninduced | 9.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.721 |
| SRR8400027 | Control - Root | 17.367 |