Gene detail information of Glyur000723s00020880 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06570.1 | 2.00E-159 | phytoene desaturation 1 |
| NR | XP_004491317.1 | 0 | PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Cicer arietinum] |
| COG | NP_842794.1 | 2.00E-75 | 4-hydroxyphenylpyruvate dioxygenase [Bacillus anthracis str. Ames] |
| Swissprot | tr|P93836|HPPD_ARATH | 0 | 4-hydroxyphenylpyruvate dioxygenase |
| trEMBL | tr|Q56H33|Q56H33_MEDTR | 0 | 4-hydroxyphenylpyruvate dioxygenase {ECO:0000256|PIRNR:PIRNR009283} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00723 | 100745 | 103824 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00457 | HPD, hppD | EC:1.13.11.27 | Tyrosine metabolism | map00350 |
| Phenylalanine metabolism | map00360 | |||
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000723s00020880.1 | PF00903.20 | Glyoxalase | 283 | 439 | 1.20E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.375 |
| SRR1783600 | control | 18.769 |
| SRR1783602 | moderate drought stress | 49.928 |
| SRR1811619 | moderate drought stress | 49.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.261 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.030 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 107.381 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 104.233 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.853 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.582 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 53.409 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.943 |
| SRR2868004 | Drought Stress (root) | 59.753 |
| SRR2967015 | Control (root) | 85.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 58.412 |
| SRR9715740 | Leaf | 68.853 |
| SRR9715741 | Leaf | 95.607 |
| SRR9715739 | Root | 28.496 |
| SRR9715742 | Root | 40.823 |
| SRR9715743 | Root | 38.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.909 |
| SRR8749028 | MeJA induced 9h | 181.905 |
| SRR8749029 | MeJA induced 9h | 77.065 |
| SRR8749030 | Uninduced | 137.896 |
| SRR8749031 | Uninduced | 300.458 |
| SRR8749032 | Uninduced | 223.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.107 |
| SRR8400027 | Control - Root | 27.528 |