Gene detail information of Glyur000723s00020874 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59080.1 | 0 | Eukaryotic aspartyl protease family protein |
| NR | XP_003617399.1 | 0 | 60S ribosomal protein L18a [Medicago truncatula] |
| Swissprot | tr|Q766C2|NEP2_NEPGR | 8.00E-75 | Aspartic proteinase nepenthesin-2 (Precursor) |
| trEMBL | tr|G7KD30|G7KD30_MEDTR | 0 | Eukaryotic aspartyl protease family protein {ECO:0000313|EMBL:AET00358.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00723 | 57811 | 60084 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000723s00020874.1 | PF14543.1 | TAXi_N | 213 | 392 | 5.90E-44 |
| Glyur000723s00020874.1 | PF14541.1 | TAXi_C | 421 | 573 | 1.70E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.657 |
| SRR1783600 | control | 1.703 |
| SRR1783602 | moderate drought stress | 0.881 |
| SRR1811619 | moderate drought stress | 0.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.580 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.470 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.256 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.302 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.403 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.294 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.405 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.922 |
| SRR2868004 | Drought Stress (root) | 29.435 |
| SRR2967015 | Control (root) | 57.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.372 |
| SRR9715740 | Leaf | 27.508 |
| SRR9715741 | Leaf | 39.840 |
| SRR9715739 | Root | 24.616 |
| SRR9715742 | Root | 67.126 |
| SRR9715743 | Root | 60.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 82.687 |
| SRR8749028 | MeJA induced 9h | 58.681 |
| SRR8749029 | MeJA induced 9h | 77.221 |
| SRR8749030 | Uninduced | 164.501 |
| SRR8749031 | Uninduced | 111.055 |
| SRR8749032 | Uninduced | 84.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.438 |
| SRR8400027 | Control - Root | 32.911 |