Gene detail information of Glyur000723s00020873 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G34480.1 | 2.00E-93 | Ribosomal protein L18ae/LX family protein |
| NR | KDO51884.1 | 6.24E-125 | hypothetical protein CISIN_1g030276mg [Citrus sinensis] |
| Swissprot | tr|Q9ATF5|RL18A_CASSA | 1.00E-120 | 60S ribosomal protein L18a |
| trEMBL | tr|A0A067E9K7|A0A067E9K7_CITSI | 2.00E-125 | 60S ribosomal protein L18a {ECO:0000256|PIRNR:PIRNR002190} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00723 | 50912 | 52604 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000723s00020873.1 | PF01775.12 | Ribosomal_L18ae | 7 | 128 | 3.40E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.511 |
| SRR1783600 | control | 23.406 |
| SRR1783602 | moderate drought stress | 20.988 |
| SRR1811619 | moderate drought stress | 20.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.461 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.405 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.152 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.153 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 36.265 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.228 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.226 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.162 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 83.846 |
| SRR2868004 | Drought Stress (root) | 43.932 |
| SRR2967015 | Control (root) | 41.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.719 |
| SRR9715740 | Leaf | 2.008 |
| SRR9715741 | Leaf | 2.104 |
| SRR9715739 | Root | 9.500 |
| SRR9715742 | Root | 7.897 |
| SRR9715743 | Root | 7.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 115.402 |
| SRR8749028 | MeJA induced 9h | 39.912 |
| SRR8749029 | MeJA induced 9h | 76.208 |
| SRR8749030 | Uninduced | 7.201 |
| SRR8749031 | Uninduced | 5.128 |
| SRR8749032 | Uninduced | 9.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.841 |
| SRR8400027 | Control - Root | 23.942 |