Gene detail

Gene detail information of Glyur000723s00020864.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04920.1	0	sucrose phosphate synthase 3F
NR	XP_003545147.1	0	PREDICTED: probable sucrose-phosphate synthase 3-like [Glycine max]
COG	YP_003529338.1	8.00E-122	sucrose-phosphate synthase [Nitrosococcus halophilus Nc 4]
Swissprot	tr\|Q8RY24\|SPSA3_ARATH	0	Probable sucrose-phosphate synthase 3
trEMBL	tr\|I1M6Y2\|I1M6Y2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G03300.1}

Sequence

Transcript Sequence

>Glyur000723s00020864.1
CACAAAGGTGAAGGGATTGCTGAATAGAGAATATGCTATGCTACCCATTATTCGTTGCCATGTGGTTCNCTCTCGTCTCTCCATCTCCAATTCTCCTTTTTAACACAAACCAAACCTTTTGCACTTTCATTTCAATGCCATATACTCTTGCATAGAAATTNGTAGAAACATCCTCTCGTATATTTTCTCAAACTCCAAACCAAACACCCCCTTTCCTTTCATTAATCATTACATAATTAAGCACGTGGAAAGCCAACAAGCCAACCATGTCGATGAATTCCCACGTAACATTAATGGAGAAGCTCTCCACGTTATTCTGACTAATTAAGATTGAGTTGTGTTTTNAGGAAACTGTGCAGCGTGCGCGCACACACTGTTTTAGATTTAGTGGACCTAACTCAATTCCACAAAACCACCGGTTTATAAGCTAAATGGCTGGGAATGAGTGGATTAATGGGTACCTTGAGGCTATACTATCAACTGGGTCAGCTACAACCGTTGAGGAGCATCAAAGGGCGGTGGCTCCTACTCCCAGAGAGAGTGTGCATTTCAACCCCACAAAGTACTTTGTGGAAGAGGTGGTGAGCAGTGTGGATGAGTCTGACCTGCACCGCACTTGGCTCAAGGTGGTTGCCACTCGCAACACCAGGGAGCGAAGCTCAAGGCTTGAGAACATGTGCTGGCGCATTTGGCACCTTGCCCGCAAGAAGAAACAGTTGGAAGTGGAGGAACACCATAGATTGGCATACCGGAGATGGGAAAGGGAACAAGGACGCAGGGATGCAACAGAGGACATGTCTGAAGATTTGTCAGAAGGGGAAAAGGGGGATATCATTGGGGAGTTGATACAAATGGAGACACCAAAGAAAAAACTCCAGGGCCAGATTTCCAACTTGGAAGTGTGGTCTGATGACAAAAAGGAAAAGAAGATTTACATTGTCCTTGTCAGAGATTCTGATACTGGTGGACAGATTAAATATGTGGTGGAACTTGCTCGTGCACTTGCAAAAATGCCAGGAGTGTATAGAGTAGACCTCTTCACACGCCAAATCTCATCTCCTGAAGTTGATTGGAGCTATGGAGAACCCACAGAAATGCTAACTGCAGGCACAGATGAGGATGATGATGACACTGGGGAGAGCAGTGGTGCATATATCATAAGAATACCCTTTGGTCCACGTGACAAGTATCTCCAGAAAGAGCTTCTTTGGCCACATGTTCAAGAATTTGTGGATGGAGCCTTAGCTCACATCCTCAACATGTCAAAAGTATTGGGTGAACAAGTTGGTGGTGGTCAACCTGTGTGGCCTTATGTGATTCATGGACATTATGCTGATGCTGGAGACAGTGCTGCTCTTCTTTCAGGAGCTTTGAATGTGCCAATGGTGCTCACTGGCCATTCCCTTGGAAGAAACAAGCTGGAACAGCTCATTAAGCAAGGGCGCCAATCAAGGGAGGATATCAATTCAACATATAAGATAATGAGGAGGATAGAGGCAGAAGAACTTTCCCTGGATGCTGCAGAACTTGTTATCACTAGTACAAGACAGGAAATTGATGAGCAGTGGGGACTTTATGATGGGTTTGATGTCAAGCTNGAGAAAGTTTTGCGTGCTCGTGCTAGGCGCGGTGTCAACTGTCACGGTCGATACATGCCAAGGATGGCGGTTATCCCCCCAGGTATGGACTTTAGCAATGTTGTGCCNCAAGAAGATGGCCCTGAAGTGGATGGGGAGCTCTCACAGCTTACTGCTGGTGCAGATGGGTCTTCACCAAAAGCTTTACCTGCAATCTGGTTNGAAGTGATGCGTTTCTTCACAAATCCTCACAAGCCTATGATCTTGGCCTTATCAAGGCCAGATCCAAAAAAGAACATAACCACTTTGTTAAAGGCTTTTGGAGAATGTCGTCCCTTAAGAAAACTAGCTAATCTTACGCTTATAATGGGAAACAGAGATGACATAGATGAGATGTCTTCTGGGAATGCTAGTGTGCTCACAACAGTGTTGAAATTGATTGATAAGTATGACCTATACGGGCAAGTGGCATACCCTAAACATCACAAGCAATATGATGTTCCTGAGATATATAGATTTGCCGCTAAAACAAGGGGAGTTTTCATAAATCCAGCTTTAGTGGAACCTTTTGGTCTTACTTTAATTGAGGCAGCTGCTCATGGACTGCCATTGGTGGCCACTAAAAATGGAGGACCAGTGGACATAAATCGGGCCCTCAACAATGGTTTGCTTGTGGACCCTCATGATCAGCAAGCAATTGCTGATGCATTGCTCAAGTTGTTGTCAGAGAAAAACCTGTGGCACGAGTGCAGGAAAAATGGTTGGAAGAACATACACCTTTTCTCTTGGCCCGAACACTGTCGTACCTATTTGACTCGGGTGGCTGCGTGCCGGATAAGGCATCCACAATGGCAAACTAATACTCCAGAGGATGATGTAGCTGTTGAAGAGTCTTTCAATGACTCACTTAAGGATGAACAGGACATGTCCCTTAGGCTCTCAATCGATGGTGACTTGGCTGCTGCAAGTGGTGGTCTTGAGGTCCAAGACCAAGTGAAACGTCTCCTAAGCAAGATAAGGAAGTCAGATTCTGGTTCAAATCAGGATGGTGGAAGTAAAGTAAAGAAGCCAGATTCTGGTTCAAATAGTGAGAACATGTTGCTTGACAATGTAACCAATAAATACCCTCTATTGAGGAGAAGACGCAGATTGATTGTTATAGCACTNGATTCCTATGACAATAATGGAGCTCCTGATAAGAAGATAACTGAGATAGTGCAAAGGATAATTAAAGCTGTTCAACTAGACCCTCAAACTGCAAGAGTTTCAGGGTTTGCTCTATCAACTGCTATGCCAATGCAAGAAACAGTAGAGTTCCTAACATCAGGCAATATTCCAGTAAATGAGTTTGATGCTTTGATTTGCAGTAGTGGGAGTGAAGTTTACTACCCTGGTATTTACACAGAAGATGGAAAGCTTTTGCCTGATCCAGATTATGAGGTACATATGGACTATCGTTGGGGTTGTGAAGGTCTAAAGAAAACCATTTGGAAACTCATGAACACCTCTGAAGGTGTAGAAAATCCTGAAAAAACTTCCAGCCCCATTGAGGAAGATCTGAAGTCAAGCAATGCACATTGCATCTCATACAAAATAAAGGACCTTAGTAAGGCAAGGAAAGTTGATGACTTGAGGCAGAAGCTTAGGATGAGAGGTCTACGTTGTCATCCTATGTATCTCTTTGTCCGTTGGAGAATGAATGTTGCAAACATGTATGTCATCCTTGGAGAAACCGGGGATACTGATTATGAGGAAATGATTTCTGGAACTCACAAGACCATAATCATGAAGGGAGTGGCGTCTAAGGGTTCAGAAGAGTTGCTTAGAGGTCCAGGAAGCTACCAAAGAGATGANATTGTCCCAAATGAGAGTCCCCTTGTCACATACATTAGTGAAACAACAGAGGAAAAAATTGCTAATGCTTTGAAGCAACTTTCAAAATCTGGAGGAATCTGAGGTGCTGCTACNGTATTAAGTACAGTTTTCTTTGCTATCTCTTTTGAGAACAAGTAATACATTTACCTTTCCAGGTACAGAATGGAAATTGGATGTAACTATCTGGTACCATTATGCATAAATTAAATCTGGCCAAACTGTAGCTAGATTGTGGTTTTCTTTTT

Protein Sequence

>Glyur000723s00020864.1
MAGNEWINGYLEAILSTGSATTVEEHQRAVAPTPRESVHFNPTKYFVEEVVSSVDESDLHRTWLKVVATRNTRERSSRLENMCWRIWHLARKKKQLEVEEHHRLAYRRWEREQGRRDATEDMSEDLSEGEKGDIIGELIQMETPKKKLQGQISNLEVWSDDKKEKKIYIVLVRDSDTGGQIKYVVELARALAKMPGVYRVDLFTRQISSPEVDWSYGEPTEMLTAGTDEDDDDTGESSGAYIIRIPFGPRDKYLQKELLWPHVQEFVDGALAHILNMSKVLGEQVGGGQPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRNKLEQLIKQGRQSREDINSTYKIMRRIEAEELSLDAAELVITSTRQEIDEQWGLYDGFDVKLEKVLRARARRGVNCHGRYMPRMAVIPPGMDFSNVVPQEDGPEVDGELSQLTAGADGSSPKALPAIWXEVMRFFTNPHKPMILALSRPDPKKNITTLLKAFGECRPLRKLANLTLIMGNRDDIDEMSSGNASVLTTVLKLIDKYDLYGQVAYPKHHKQYDVPEIYRFAAKTRGVFINPALVEPFGLTLIEAAAHGLPLVATKNGGPVDINRALNNGLLVDPHDQQAIADALLKLLSEKNLWHECRKNGWKNIHLFSWPEHCRTYLTRVAACRIRHPQWQTNTPEDDVAVEESFNDSLKDEQDMSLRLSIDGDLAAASGGLEVQDQVKRLLSKIRKSDSGSNQDGGSKVKKPDSGSNSENMLLDNVTNKYPLLRRRRRLIVIALDSYDNNGAPDKKITEIVQRIIKAVQLDPQTARVSGFALSTAMPMQETVEFLTSGNIPVNEFDALICSSGSEVYYPGIYTEDGKLLPDPDYEVHMDYRWGCEGLKKTIWKLMNTSEGVENPEKTSSPIEEDLKSSNAHCISYKIKDLSKARKVDDLRQKLRMRGLRCHPMYLFVRWRMNVANMYVILGETGDTDYEEMISGTHKTIIMKGVASKGSEELLRGPGSYQRDXIVPNESPLVTYISETTEEKIANALKQLSKSGGI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00723	13017	19351	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00696	E2.4.1.14	EC:2.4.1.14	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005985 sucrose metabolic process

GO:0009058 biosynthetic process

molecular_function
GO:0046524 sucrose-phosphate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000723s00020864.1	PF13579.1	Glyco_trans_4_4	178	376	2.50E-10
Glyur000723s00020864.1	PF00534.15	Glycos_transf_1	463	638	4.70E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.180
SRR1783600	control	1.192
SRR1783602	moderate drought stress	0.850
SRR1811619	moderate drought stress	0.895

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.450
DRR006520	Root Summer glycyrrhizin high producing strain	0.527
DRR006521	Root Winter glycyrrhizin high producing strain	6.095
DRR006522	Root Winter glycyrrhizin high producing strain	6.093
DRR006523	Root Summer glycyrrhizin low producing strain	0.779
DRR006524	Root Summer glycyrrhizin low producing strain	0.875
DRR006525	Leaf Summer glycyrrhizin high producing strain	96.923
DRR006526	Leaf Summer glycyrrhizin high producing strain	95.319

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.524
SRR2868004	Drought Stress (root)	0.422
SRR2967015	Control (root)	0.437

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.914
SRR9715740	Leaf	46.614
SRR9715741	Leaf	25.393
SRR9715739	Root	0.134
SRR9715742	Root	0.706
SRR9715743	Root	0.310

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.415
SRR8749028	MeJA induced 9h	0.423
SRR8749029	MeJA induced 9h	0.506
SRR8749030	Uninduced	0.104
SRR8749031	Uninduced	0.049
SRR8749032	Uninduced	0.062

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.043
SRR8400027	Control - Root	3.886