Gene detail

Gene detail information of Glyur000723s00020862.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74700.1	3.00E-125	tRNAse Z1
NR	XP_007153186.1	0	hypothetical protein PHAVU_003G014100g [Phaseolus vulgaris]
COG	YP_007202617.1	4.00E-56	beta-lactamase superfamily metal-dependent hydrolase [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q8LGU7\|RNZN_ARATH	3.00E-157	Nuclear ribonuclease Z
trEMBL	tr\|V7C8G3\|V7C8G3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW25181.1}

Sequence

Transcript Sequence

>Glyur000723s00020862.1
GTCCGTTCTACACTTCTACTTATATCTTCAGTTATTGCTCATGGAGCCTGGAGGTGAGAAGTCAAAGTCAGTAAGAGAAATACGAGGCTCAAACTCTTGTTCAAAGAAAGAAAAGGGTATGAACATTGAAGGATATCAAGTTGAGGGCTTGTCCATTGGAGGCCATGAAACCTGCATAATTTTCCCCACACTTAAAGTAGCCTTTGATATTGGTCGTTGCCCACCTCGTGCTGTTTCTCAAGACTTTCTTTTAATCTCCCATGCTCACATGGATCACATTGGAGGACTACCAATGTATGTTGCCACGCGTGGTTTGTACCGCATGAAGCCTCCAACAATTATAGTACCAATTTCAATAAAAGAGGATGTAGAGAAACTATTTGAGGTTCACAGGAAAATGGACCATTCGGAGCTTAACCACGAACTGATTGCCTTGGATGTAGGGGAAGAGTTTTATTTGAGAAGGGATCTCAAAGTAAAAGCTTTTCAGACTTACCATGTAATACCCAGCCAGGGTTATATACTTTACTCTGTGAGACAGAAACTTAAACCAGAGTACATTGGTCTTTCTGGATATGAAATTAAGAATTTGAAGTCATCCNGTGTGGAGATAACATACACTTTGACAGAACCAGAGATTGCTTTCACAGGAGACACCATGTCAGATTTCATAATTGATGAAAATAACACTGATGTCTTGCGGGCTAGAGTTCTTGTATTGGAGTGCACTTTTGTTAACAAGTCAATTACTGTGGAACATGCCAGAGATTACGGACACACTCATTTGTTTGAGATAATAAGTTATGCTGAGAGGTTACAGAACAGAGCAATCCTTTTGATTCACTTTTCAGCACGTTATACGGTAGAGGAAATTCAACAAGCCGTAAGTGCATTGCCTCCCCCTTTAGCTGGTCGAACATTTGCACTTACNGAAGGTTTCTGACAAGAAGTTGGGACCTTGATTGAGTACATAAAGTGGATGCCCCCTCTATCCCCACCTGCCACTGTTGGCGCAGGCCGAGTTCAATTTACCATCATCATTGTTGGCAAATGTGGGAGCGGTGGAATGGGTGGAAAGGAAGGGAAGTGATTAAAGGGGAATTGCTTCCCCTTGTTTGGATGCTTAATTAAAAAGTAAAGGAATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00723	8110	12535	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00784	rnz	EC:3.1.26.11	RNA transport	map03013

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000723s00020862.1	PF12706.2	Lactamase_B_2	66	269	3.20E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.671
SRR1783600	control	3.639
SRR1783602	moderate drought stress	3.276
SRR1811619	moderate drought stress	3.012

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.292
DRR006520	Root Summer glycyrrhizin high producing strain	2.981
DRR006521	Root Winter glycyrrhizin high producing strain	1.809
DRR006522	Root Winter glycyrrhizin high producing strain	1.862
DRR006523	Root Summer glycyrrhizin low producing strain	3.009
DRR006524	Root Summer glycyrrhizin low producing strain	2.920
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.008
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.172

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.683
SRR2868004	Drought Stress (root)	7.596
SRR2967015	Control (root)	6.155

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.416
SRR9715740	Leaf	6.105
SRR9715741	Leaf	5.239
SRR9715739	Root	2.029
SRR9715742	Root	3.800
SRR9715743	Root	3.951

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.861
SRR8749028	MeJA induced 9h	1.634
SRR8749029	MeJA induced 9h	3.038
SRR8749030	Uninduced	0.903
SRR8749031	Uninduced	0.219
SRR8749032	Uninduced	0.131

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.264
SRR8400027	Control - Root	5.646