Gene detail

Gene detail information of Glyur000722s00018855.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23880.1	2.00E-35	F-box and associated interaction domains-containing protein
NR	XP_004486107.1	7.69E-141	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum]
Swissprot	tr\|Q9LIR8\|FBK67_ARATH	2.00E-39	F-box/kelch-repeat protein At3g23880
trEMBL	tr\|I1MFB8\|I1MFB8_SOYBN	3.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G10860.1}

Sequence

Transcript Sequence

>Glyur000722s00018855.1
ATGGCGCCAGACAAGCGAAACAACGCCGCTTCGTCTCAGGCACCGGCGAAGGAAAGAACCGCCCGTACCACCAGGAGGCAGCGATTGACCACCTCTACGGGAACCCTATCACCACCTTCACTTCCCGGTGATTCGCTTTACGCGCCGTCGCCGCTTCCCACTCTTCCGTTCGAGATCCTGTTAGAAATCCTACAGAGGCTCCCCGTGAAGTCCCTCTTCCGATTCCGGTGCGTTTGCAAGTCCTTCAATTCCCTNATTTCCGATCCCAAATTCGCCAAGAAGCACCTTCGTGTGTCAACCGCGCGCCACCGCCACCGCCACCACCTCATCGTAAGCTCCACAAACTCCTCATCCTCACGCAAGTTCCTTCTCTGGGATTCCCCAATCTCCTCTGTTTTGAATGCCTTGTCCACTAGTGCTAGCGCCATACCACAGACGCAGCTCAAGTACCCTCTCACTATTAACAAAAAACAACACCCATCTTTTTCCACGACTTTGGCCGNTTGCTCTTGTGATGGCATCCTCTGCTTTCCCATCGATCAGCGTTTCGCCCTTTTGTGGAACCCTTCCATTAGAAAATTCAAGAAATTGCCCCCTTTGGAAATTGAAAATCCACAATNTGCTTACACTGTATATAGCTTCGGGTATTATCATTTCACTGATAGTTACAAGGTGGTTGCTGTTTTTTTAGNGGATTGCAAAACCCAAGTCAGCATTCATACTTTGGGTACCGATTCTTGGAGAAGGATTCAGGAGTTCCCTTATGGTTCACCGACTTGTGAACCAGGAATATTTNTTAGTGGGACTGTTAATTGGTTGGCATTTGCTGCATCGAGTTCTTGGCCGGTTATTGTTTCTCTTGACTTGGGGAAGNAGTGTTATCAGGAGATTTTGCAGCCTGATTATGGAGTGGTAGAAGATATGCTTACCTTGTCCTTGGGAGTGTTGAGGGATTGTTTGTGCATCTTTTCTCATACTGATACGTTTTTGGACATTTGGTTTATGAAGGATTATGGAAAGAAAGAGTCTTGGGCGAAACTGTTCACTATTCCTTACANGGTAGATCTTGGTTTTCTTCGCAAGGTACTTTATATTTATGAGGATGANCAAGTGCTTCTCGAGTCCCGGTCAAGATTAGTTGTTTACGATTCCAAAACGAGTACTTTTAAGACTCCCAATGTTCGAAACATCAATGGTTGGGTGGCCCCAGAAGTCTATGTTGAGAGCTTGGTATCACCTTGTTCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00722	124353	125600	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000722s00018855.1	PF00646.28	F-box	51	96	1.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.434
SRR1783600	control	5.161
SRR1783602	moderate drought stress	7.645
SRR1811619	moderate drought stress	7.460

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.578
DRR006520	Root Summer glycyrrhizin high producing strain	8.962
DRR006521	Root Winter glycyrrhizin high producing strain	9.643
DRR006522	Root Winter glycyrrhizin high producing strain	9.841
DRR006523	Root Summer glycyrrhizin low producing strain	4.438
DRR006524	Root Summer glycyrrhizin low producing strain	3.891
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.416
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.573

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.387
SRR2868004	Drought Stress (root)	4.294
SRR2967015	Control (root)	4.580

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.598
SRR9715740	Leaf	5.709
SRR9715741	Leaf	3.703
SRR9715739	Root	7.802
SRR9715742	Root	3.994
SRR9715743	Root	4.030

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.453
SRR8749028	MeJA induced 9h	8.651
SRR8749029	MeJA induced 9h	5.509
SRR8749030	Uninduced	5.366
SRR8749031	Uninduced	3.719
SRR8749032	Uninduced	5.088

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.148
SRR8400027	Control - Root	4.388